Protein Info for CSW01_04595 in Vibrio cholerae E7946 ATCC 55056

Annotation: DUF423 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 128 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 48 to 65 (18 residues), see Phobius details amino acids 77 to 95 (19 residues), see Phobius details amino acids 101 to 125 (25 residues), see Phobius details PF04241: DUF423" amino acids 20 to 110 (91 residues), 106.1 bits, see alignment E=4.4e-35

Best Hits

KEGG orthology group: None (inferred from 98% identity to vcm:VCM66_0854)

Predicted SEED Role

"COG2363"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (128 amino acids)

>CSW01_04595 DUF423 domain-containing protein (Vibrio cholerae E7946 ATCC 55056)
MNSKYLLALGGLLSGVAVGLGAFAAHGLKKMLSPYLLDVFETGVQYQFIHALALLVCGVL
LLLPLHEAAHKGFRRAAQFFLVGIVCFSGSLYALALTGVKWFGPITPFGGVMFILGWIWF
SYAAWKSQ