Protein Info for CSW01_04520 in Vibrio cholerae E7946 ATCC 55056

Annotation: aminobenzoyl-glutamate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 528 transmembrane" amino acids 35 to 55 (21 residues), see Phobius details amino acids 76 to 92 (17 residues), see Phobius details amino acids 98 to 118 (21 residues), see Phobius details amino acids 130 to 171 (42 residues), see Phobius details amino acids 178 to 197 (20 residues), see Phobius details amino acids 227 to 245 (19 residues), see Phobius details amino acids 280 to 300 (21 residues), see Phobius details amino acids 319 to 340 (22 residues), see Phobius details amino acids 361 to 380 (20 residues), see Phobius details amino acids 400 to 420 (21 residues), see Phobius details amino acids 427 to 445 (19 residues), see Phobius details amino acids 457 to 476 (20 residues), see Phobius details amino acids 488 to 516 (29 residues), see Phobius details PF03806: ABG_transport" amino acids 19 to 526 (508 residues), 767.9 bits, see alignment E=3.6e-235 PF03606: DcuC" amino acids 141 to 503 (363 residues), 26 bits, see alignment E=3.4e-10

Best Hits

KEGG orthology group: K12942, aminobenzoyl-glutamate transport protein (inferred from 100% identity to vcm:VCM66_0837)

Predicted SEED Role

"Multidrug efflux pump component MtrF" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (528 amino acids)

>CSW01_04520 aminobenzoyl-glutamate transporter (Vibrio cholerae E7946 ATCC 55056)
MSSSASINQNAPKKPLITRFLDGVEYLGNLLPHPITLFAIFCVVLLVASGIAGYFELSVV
DPRPEGAKGRAADGMIHVVSLLNADGLELIVTNLVKNFVGFAPLGTVLVAMLGVAIAEHS
GLLSAAMRGLVMGASKRMVTFTVVFAGIISNTASELGYVVLIPLAAMLFHSLGRHPLAGL
AAAFAGVSGGYSANLLIGTVDPLLSGITETAARMIDPTYSVGPEVNWYFMAASTFVIAIL
GAFVTEKIVEPKLGKYDVSEASDDLSQDKMGSLTALEKKALAYAGLAVVVVSALLAWTIV
PADGVLRGEDGLVSGSPFLKSIVAFIFIFFAIPGYVYGRVVGTMKTDRDVINAMAKSMSS
MGMYIVLVFFAAQFVAFFSWTKFGQVLAVLGADFLKDIGLTGPMLFFAFILMCGYINLMI
GSASAQWAVTAPIFVPMLMLVGYAPEVIQAAYRIGDSVTNIITPMMSYFGLILAVATRYM
KNLGIGTLIATMLPYSVVFMVGWSLLFYVWVFVLGLPVGPGAATYYTP