Protein Info for CSW01_04235 in Vibrio cholerae E7946 ATCC 55056

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1533 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcj:VCD_003506)

Predicted SEED Role

"inner membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1533 amino acids)

>CSW01_04235 hypothetical protein (Vibrio cholerae E7946 ATCC 55056)
MFNKKITITSTGITLSIFSFMAKADPKINFAVDYFSYGSNGRCMVAMEIEKSNLNEIYNI
INKNHFDIDFEVLLYEKDKNGKIEKPHGTEMVKFKFNEFDNLVHDHVIVMSKMELPYSWW
HECKVLSVNLSDKKYAKVTIYDDFNGDVSFRNIVENNKISSFDFFSDIVNMAFAYRMKDE
KPTENEILQNISKMKSYNKGKSGNESLNRKIIGYTNTISLGDSGINGSIGFNISEDFIKL
RTKDKINNFIKEKIVKPAVEVGIVDRKFQESKYIDELRQRLLKSLNQDHYFEYGSEKNLQ
LSLVMMFSDLYSQPILSYGKTIPAYSDSFFSDLWESMLSGFINSIEPVKLYEHESYHGHS
ISLNMDSEFLHGFNDIASSIKIPKGWQVTLFEHGGYTGSSIVANSDIKALGEKNLNDTVS
SLMVEYVGDDPSELYDMLLLTINYGNLSGIDFSREIFNKNKDIIVDYKKGTINHRGITGG
FLGKTFAQVAAILYQKSIEELSYIELLSTKNALESIGIDTVYPYGSMDNIKASLFLRVNN
NLSKRLLPEEVGIGSEPFIIDELLARNNQLTMFNFSNALDKLTEDIYSNANLYRSDNVVR
LYADHNYTGHYIDIENSTKFLHGFNDTLSSWTIPHGWSVRFYEHGDYQGRYWTRDASGNE
SGFNDVISSIEILKKTSGIKGSLIRNELESLKNSYREIDKFQVIVGYENETPIYALPLTD
ELFAKAQLYSYGLDANFVDKHWKSYLKKGRLSLIPGVRVGKDILKKDAAALGGDVTTKGA
QDLWRRKYQEISQVMAKYIATLISFKAKLEGKESWDIQSENKNRSVRFNFGFGITYYNMG
NNGKAHSRYENIPTQSWVMTGKDISYSVTTPGDLLSLFSLNNFKVIEPIDFNSGSNNYPL
YQLMNSDYADKCSYYQDGWYPRWNVCDTKFITRNKKSYNTKDIMSYGWQEFLNFKMNDLK
TVQTDRDIAYQVLMAILPVWGTVEDIKSGDAGMATLGVLGDVMFFLPIAKSVSSIGKLSA
KAASSKLLPRNVKFVRNVIGLNKQGKYSLTSSQADRAFYKLKIQGKLKELPKVILNELNP
IAGLDQLVVTGTSKLYKKYSSRVSIPKKNIIGDNSVVFYDDLKFKSEVFSVSYLDDGYLI
INNQYRAVYIDGNYYRVEYDPILRANFIYEQNSGRRIEIIKDKNGNWSIKEINNGICPLV
SLMNNTKVCHFTNIDDALISMGFDPKTRTASGLLELINGRYGPDIKEYLLKLNSSLSLNY
NIDIDTLNWVFDTIENSGMSRYAFTPFVKNTDAIMYDMLGKFYNNNMSIKPVFLNKSQYK
KLKKTLDSDKELIINVISEQRKINLNEAQQLFDEFYASVTKDPIFGLDSITHDRPVIHVV
GHGDAGDEVIYPGDASHYFYAFELADMLKNKGLKPDSIIKLDFCWSACSLKPSDYSKTEV
LTRMNKGDYTPLFGDIDDSFLGEFAKELTAMYPTFRGPIIGYVGTVLNTIQDNVLTLANT
QGRFHAVEMNFSDGKFFFKKEDAEVIYGSYKNK