Protein Info for CSW01_03655 in Vibrio cholerae E7946 ATCC 55056

Annotation: murein transglycosylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 648 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF00760: Cucumo_coat" amino acids 157 to 207 (51 residues), 25.3 bits, see alignment 1.6e-09 PF14718: SLT_L" amino acids 411 to 475 (65 residues), 77.1 bits, see alignment E=1.5e-25 PF01464: SLT" amino acids 491 to 599 (109 residues), 109.7 bits, see alignment E=9.7e-36

Best Hits

KEGG orthology group: K08309, soluble lytic murein transglycosylase [EC: 3.2.1.-] (inferred from 100% identity to vco:VC0395_A0230)

Predicted SEED Role

"Soluble lytic murein transglycosylase precursor (EC 3.2.1.-)" (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (648 amino acids)

>CSW01_03655 murein transglycosylase (Vibrio cholerae E7946 ATCC 55056)
MTRLTVFKPRSLVSILMFTTVWAVGSASASTLDLEAQRAQYDKAQRWLDEKNVAQYQRIR
KQIDSYPLTPYLDYRAFLIDLGSKPPIAVRNFIDSHKEYPFSARIAAPYLDALARSKKWS
ALLQFQTQLPNGETYQCHYYNAKLQTGKRNEAFEGAKKLWLNGASIADACDPLFAEWDRV
GGLSDDWVLKRALLAFEGRNRNLIVYLQKKLDGKKSQAKAQGMLELFDKPERVLAYSRKA
SQDPINQKLAELALQKWARSEPQEAQAVFNDVAKAQGWNQEQKGRVARFIAIRLMDTEEA
AIAKWRDEVTRTSQDVRLIEARIRLALRENDWRGLSQWIAVLPEQERKTLRWQYWQGRSE
IALGKKKEGTERLKALLGQRSFYSVAAAKILQQSVNYPTSTVTLDMKQIKAHKKALARID
ELIALDKVPAAKSEWRWLLDRVSQKEKEMLAAYAADSGWYQMTIAATISASLWDNNQLRF
PVVHQNLFTLHGRKNGVDPITLMSLARQESALNPDAQSPVGARGLMQIMPDTARYTARKY
QLSYSNPDELYQVGKNIEIGSRYLSSLLERYDQNRILAFAAYNAGPSRVDSWLKRSQGKL
DAYGFIEAIPFAETRGYVQNILMFETYYRDLMGVQGRFLNEHELNTKY