Protein Info for CSW01_03535 in Vibrio cholerae E7946 ATCC 55056

Annotation: prolipoprotein diacylglyceryl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 271 transmembrane" amino acids 22 to 40 (19 residues), see Phobius details amino acids 60 to 80 (21 residues), see Phobius details amino acids 95 to 117 (23 residues), see Phobius details amino acids 124 to 144 (21 residues), see Phobius details amino acids 178 to 196 (19 residues), see Phobius details amino acids 202 to 220 (19 residues), see Phobius details amino acids 232 to 257 (26 residues), see Phobius details TIGR00544: prolipoprotein diacylglyceryl transferase" amino acids 3 to 261 (259 residues), 304.8 bits, see alignment E=3e-95 PF01790: LGT" amino acids 13 to 257 (245 residues), 284.9 bits, see alignment E=2.3e-89

Best Hits

Swiss-Prot: 100% identical to LGT_VIBC3: Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase (lgt) from Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)

KEGG orthology group: K13292, phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC: 2.-.-.-] (inferred from 100% identity to vcm:VCM66_0632)

Predicted SEED Role

"Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)" (EC 2.4.99.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.-.-.-

Use Curated BLAST to search for 2.-.-.- or 2.4.99.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (271 amino acids)

>CSW01_03535 prolipoprotein diacylglyceryl transferase (Vibrio cholerae E7946 ATCC 55056)
MPQGYLQFPNIDPVLFSIGPLAVRWYGLMYLVGFLFAMWLANRRADRAGSGWTREQVSDL
LFAGFLGVVIGGRVGYVIFYNFDLFLADPLYLFKVWTGGMSFHGGLLGVITAMFWYARKN
QRTFFGVADFVAPLVPFGLGMGRIGNFMNSELWGRVTDVPWAFVFPNGGPLPRHPSQLYE
FALEGVVLFFILNWFIGKPRPLGSVSGLFLAGYGTFRFLVEYVREPDAQLGLFGGFISMG
QILSLPMVIIGILMMVWSYKRGLYQDRVAAK