Protein Info for CSW01_03460 in Vibrio cholerae E7946 ATCC 55056

Annotation: ribosomal-protein-alanine N-acetyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 161 TIGR01575: ribosomal-protein-alanine acetyltransferase" amino acids 24 to 156 (133 residues), 130.3 bits, see alignment E=2.5e-42 PF00583: Acetyltransf_1" amino acids 26 to 133 (108 residues), 60.8 bits, see alignment E=3.9e-20 PF13302: Acetyltransf_3" amino acids 39 to 134 (96 residues), 28 bits, see alignment E=8e-10 PF13673: Acetyltransf_10" amino acids 42 to 139 (98 residues), 42.5 bits, see alignment E=1.6e-14 PF13508: Acetyltransf_7" amino acids 57 to 134 (78 residues), 46.5 bits, see alignment E=1e-15 PF08445: FR47" amino acids 79 to 139 (61 residues), 29.9 bits, see alignment E=1.1e-10

Best Hits

KEGG orthology group: K03789, ribosomal-protein-alanine N-acetyltransferase [EC: 2.3.1.128] (inferred from 100% identity to vch:VC0657)

Predicted SEED Role

"Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)" in subsystem Bacterial RNA-metabolizing Zn-dependent hydrolases or Conserved gene cluster associated with Met-tRNA formyltransferase or Ribosome biogenesis bacterial (EC 2.3.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.3.1.-, 2.3.1.128

Use Curated BLAST to search for 2.3.1.- or 2.3.1.128

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (161 amino acids)

>CSW01_03460 ribosomal-protein-alanine N-acetyltransferase (Vibrio cholerae E7946 ATCC 55056)
MAANLRSSRNRIMTTVFTAMQPTHLDAVWRIECAAHSHPWAESLVRDLTSRGACHQVMLV
DQQVVGYFYAQNIVGEVTLLNIAIDPAQQGKGYGQQLLQHFIALCEQQKAESAWLEVRES
NQRAFALYQRAGFNEIDRRVNYYPVAKGKSEDAIIMSYLFL