Protein Info for CSW01_03380 in Vibrio cholerae E7946 ATCC 55056

Annotation: ribosome maturation factor RimP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 151 PF02576: RimP_N" amino acids 12 to 83 (72 residues), 103.3 bits, see alignment E=7.4e-34 PF17384: DUF150_C" amino acids 86 to 151 (66 residues), 78.6 bits, see alignment E=3.3e-26

Best Hits

Swiss-Prot: 100% identical to RIMP_VIBCH: Ribosome maturation factor RimP (rimP) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: K09748, ribosome maturation factor RimP (inferred from 100% identity to vcm:VCM66_0599)

Predicted SEED Role

"FIG000325: clustered with transcription termination protein NusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (151 amino acids)

>CSW01_03380 ribosome maturation factor RimP (Vibrio cholerae E7946 ATCC 55056)
MTGLERQLTEMLEAPVVAAGYELVGLEFVRAGQHSTLRIFIDHENGITVEDCAEVSRQVS
AVLDVEDPISVVYNLEVSSPGLERPLFKAAHYEQFIGHEVSIVLKMAVGNRRKWKGVIQS
IDGETVAVMVDGQEEHFALSNISKANLIPKF