Protein Info for CSW01_03105 in Vibrio cholerae E7946 ATCC 55056

Annotation: hypoxanthine phosphoribosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 177 TIGR01203: hypoxanthine phosphoribosyltransferase" amino acids 7 to 172 (166 residues), 250.1 bits, see alignment E=4.4e-79 PF00156: Pribosyltran" amino acids 12 to 159 (148 residues), 110.9 bits, see alignment E=1.9e-36

Best Hits

Swiss-Prot: 87% identical to HPRT_VIBHA: Hypoxanthine phosphoribosyltransferase (hpt) from Vibrio harveyi

KEGG orthology group: K00760, hypoxanthine phosphoribosyltransferase [EC: 2.4.2.8] (inferred from 100% identity to vco:VC0395_A0117)

MetaCyc: 74% identical to hypoxanthine phosphoribosyltransferase (Escherichia coli K-12 substr. MG1655)
Hypoxanthine phosphoribosyltransferase. [EC: 2.4.2.8]; 2.4.2.8 [EC: 2.4.2.8]

Predicted SEED Role

"Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)" in subsystem Purine conversions (EC 2.4.2.8)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.4.2.8

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (177 amino acids)

>CSW01_03105 hypoxanthine phosphoribosyltransferase (Vibrio cholerae E7946 ATCC 55056)
MKHTVEVMISEQEVAQRIRELGQQITEHYQGSSDLVLVGLLRGSFVFMADLARQIHLTHQ
VDFMTASSYGNSMQSSRDVRILKDLDDDIKGKDVLLVEDIIDTGNTLNKVKEILALREPK
SIRICTLLDKPTRREVDVEVNWVGFEIPDEFVVGVGIDYAQKYRHLPYIGKVVPLAE