Protein Info for CSW01_02795 in Vibrio cholerae E7946 ATCC 55056

Annotation: undecaprenyl-diphosphatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 signal peptide" amino acids 1 to 6 (6 residues), see Phobius details transmembrane" amino acids 7 to 29 (23 residues), see Phobius details amino acids 40 to 59 (20 residues), see Phobius details amino acids 85 to 103 (19 residues), see Phobius details amino acids 109 to 131 (23 residues), see Phobius details amino acids 151 to 177 (27 residues), see Phobius details amino acids 184 to 205 (22 residues), see Phobius details amino acids 217 to 238 (22 residues), see Phobius details amino acids 248 to 266 (19 residues), see Phobius details PF02673: BacA" amino acids 7 to 258 (252 residues), 282.3 bits, see alignment E=2.2e-88 TIGR00753: undecaprenyl-diphosphatase UppP" amino acids 7 to 257 (251 residues), 244.6 bits, see alignment E=7e-77

Best Hits

Swiss-Prot: 100% identical to UPPP_VIBC3: Undecaprenyl-diphosphatase (uppP) from Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)

KEGG orthology group: K06153, undecaprenyl-diphosphatase [EC: 3.6.1.27] (inferred from 100% identity to vch:VC0526)

Predicted SEED Role

"Undecaprenyl-diphosphatase (EC 3.6.1.27)" (EC 3.6.1.27)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.1.27

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (267 amino acids)

>CSW01_02795 undecaprenyl-diphosphatase (Vibrio cholerae E7946 ATCC 55056)
MSYFESFILALIQGFTEFLPISSSAHLILPSAILGWEDQGLAFDVAVHVGTLAAVVLYFR
KEVVSLLSAFFASIFKGDRSKEAKLAWLIVLATIPACLFGFVMKDIVELYLRSAWVIATT
TIVFGLLLWYVDKHAELKADEYQADWKKALFIGLAQAVAIIPGTSRSGATITAALYLGFT
REAAARFSFLMSIPIIVLAGSYLGLKLVTSGEPVHSGFLLTGIITSFISAYICIHFFLKL
ISRMGMTPFVIYRLVLGVGLFAFLLTQ