Protein Info for CSW01_02105 in Vibrio cholerae E7946 ATCC 55056

Annotation: MSHA biogenesis protein MshI

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 479 transmembrane" amino acids 303 to 324 (22 residues), see Phobius details PF05137: PilN" amino acids 400 to 474 (75 residues), 25.4 bits, see alignment E=6.2e-10

Best Hits

KEGG orthology group: K12279, MSHA biogenesis protein MshI (inferred from 100% identity to vco:VC0395_A2817)

Predicted SEED Role

"MSHA biogenesis protein MshI" in subsystem Mannose-sensitive hemagglutinin type 4 pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (479 amino acids)

>CSW01_02105 MSHA biogenesis protein MshI (Vibrio cholerae E7946 ATCC 55056)
MKKPSWIEKLIAPKVASQQLYVVVQPEHLYFTSDDLSPIPPQPLQQQSWQAVLVQTLQKH
AVHDVQIHLVLHSQLYQTYQIEQPSIPREEWSAALPFLLKDMLSEKVTDVVADAHPLPGS
GKVQAYVISKRTILELQSMAVSAGLTLGRVIPEQAIWGLVGGELSHFLLLHRSMGGSFKL
DAFVDRQCSFQRTLRGITAPVTDNAASALQLDSLALELQRSIDYLSAQLKGGSLQQLKVC
CDGEDQQALITGLNERLSVRASGLDGEATICGEQLARYARNIPQETINFYQDHLKPKREK
FTLTNLLLAWLALSVVLLLGYAGVGYQNWVIQQQWQEQQQHNQSLTEQAAHLRQQVAVHL
PSPAKQAAIGRIKQEISSKQQALDAIGQFDVAQQTGYSGVLNSLAQLARSDISLSSITLD
SSQLNVQGLARDPAAIPNWISQFKQELHLMGRSFEQLKIGRNDQDMITFELNTQRGEQR