Protein Info for CSW01_01750 in Vibrio cholerae E7946 ATCC 55056

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 478 transmembrane" amino acids 15 to 37 (23 residues), see Phobius details amino acids 49 to 82 (34 residues), see Phobius details amino acids 108 to 132 (25 residues), see Phobius details amino acids 153 to 182 (30 residues), see Phobius details amino acids 194 to 216 (23 residues), see Phobius details amino acids 236 to 258 (23 residues), see Phobius details amino acids 279 to 299 (21 residues), see Phobius details amino acids 305 to 324 (20 residues), see Phobius details amino acids 336 to 356 (21 residues), see Phobius details amino acids 367 to 385 (19 residues), see Phobius details amino acids 392 to 411 (20 residues), see Phobius details amino acids 417 to 437 (21 residues), see Phobius details amino acids 458 to 477 (20 residues), see Phobius details PF00939: Na_sulph_symp" amino acids 16 to 473 (458 residues), 150.4 bits, see alignment E=8.8e-48 TIGR00785: transporter, divalent anion:Na+ symporter (DASS) family" amino acids 45 to 475 (431 residues), 268.7 bits, see alignment E=4.3e-84 PF03600: CitMHS" amino acids 58 to 409 (352 residues), 160 bits, see alignment E=8.6e-51

Best Hits

KEGG orthology group: None (inferred from 100% identity to vco:VC0395_A2740)

Predicted SEED Role

"Transporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (478 amino acids)

>CSW01_01750 transporter (Vibrio cholerae E7946 ATCC 55056)
MSQEGKPMPQLERGLLVKLLICFLLPLGVLLMPIDAIPIQDLTLVQHRLLAIFLLAALLW
VLEPVPVFATSILIIALELVMISDKGLHGFRVPDPHHPLGELLKYTDIFSAFSSPIIILF
MGGFALAIAASKYELDNNLARVLLKPFGHQPKYIMLGLMLITSVFSMFMSNTATTVMMLA
LLGPIVASAPKGDLGIKALVLCIPIAANTGGIATPIGTPPNAIALQYLTGENSIDFLSWM
MMGLPFVLVQLTIAWFLLQKLFPSSQATMTLKLKGEFQRGWRAMLVYITFALTIVLWMTT
SWHGMNTYVVAIIPLAVFTLTGIMGKEELKQINWDVLWLVAGGIAIGIGLEQTGLAQALA
HSIDYQSLSPMLIVIALSLVCWLMANFMSNTATANLIMPIAAAIGTSMSSLEQVGGLQAL
LVVVAFSASLGMILPVSTPPNSLAYSTGLIESKDMAKTGLVIGGIGLGIVYLMVFLLG