Protein Info for CSW01_01295 in Vibrio cholerae E7946 ATCC 55056

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 42 to 63 (22 residues), see Phobius details amino acids 75 to 97 (23 residues), see Phobius details amino acids 117 to 139 (23 residues), see Phobius details amino acids 145 to 170 (26 residues), see Phobius details amino acids 177 to 196 (20 residues), see Phobius details amino acids 233 to 253 (21 residues), see Phobius details PF01061: ABC2_membrane" amino acids 29 to 223 (195 residues), 37.7 bits, see alignment E=8.1e-14

Best Hits

KEGG orthology group: K09690, lipopolysaccharide transport system permease protein (inferred from 100% identity to vch:VC0246)

Predicted SEED Role

"O-antigen export system, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (264 amino acids)

>CSW01_01295 ABC transporter permease (Vibrio cholerae E7946 ATCC 55056)
MYFLGMKMLKDIVSVFYNWRIVHLLGVSTLRSRYSRSKFGQTWLSITMFVQILCIGLIWS
LIWRMGVDDYLPYVGVGHIIYLFYTQTINESTGIFVADARVYLNDRQPFMLSVGAHIYRN
VLILLHNIPTIFLLVIWSSSANFEFSFMFVISLSLSLFFVLFASYFCAVISTRFRDLIQL
IGLLMQLAFFVSPVMWKVSFLPEQYQNYVYINPFASLLELIRNPIIGIDVNPLAFVSLVA
WTFIIGMVSYFSYKVLDKKVIFWV