Protein Info for CSW01_01250 in Vibrio cholerae E7946 ATCC 55056

Annotation: polymerase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 399 signal peptide" amino acids 1 to 11 (11 residues), see Phobius details transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 51 to 70 (20 residues), see Phobius details amino acids 77 to 94 (18 residues), see Phobius details amino acids 110 to 130 (21 residues), see Phobius details amino acids 138 to 161 (24 residues), see Phobius details amino acids 168 to 201 (34 residues), see Phobius details amino acids 212 to 230 (19 residues), see Phobius details amino acids 322 to 342 (21 residues), see Phobius details amino acids 354 to 370 (17 residues), see Phobius details amino acids 376 to 394 (19 residues), see Phobius details PF04932: Wzy_C" amino acids 172 to 329 (158 residues), 91.2 bits, see alignment E=3e-30

Best Hits

KEGG orthology group: None (inferred from 100% identity to vco:VC0395_A2617)

Predicted SEED Role

"O-antigen ligase" in subsystem LOS core oligosaccharide biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (399 amino acids)

>CSW01_01250 polymerase (Vibrio cholerae E7946 ATCC 55056)
MNNKITKTSIFLTISLLLITPGFSVVAVGLLTLYSSVKLIKNGLNLNKFDIIPLITLSAY
FLSNLPITIIDGDTLRYLDAGIRALLCIPMYFFIKNEISKGANLDNTLCTSTILASFGAL
AFAFYQFFILNMPRVDGFLFSINFGYLAAALAILSFGLSFTQTRFKYYLYLSVVAATVAT
ILTLTRGAILTLLFVFILFFIVNVRKIKFKQTLVFTLISFLLVSVSYQFSPRIQERVDFT
IFEISSIASNNIHAAASSGGRLQLWYAAVEAFKHNPIWGTTYSERESLNIELFKEGKVDE
WTSTVPRGHAHSQYFEAIASNGTLGILAIFAMLILPFGVFLNDYRKTGSPISQTGYLFAF
GFIIFCLTEAPLQANLIGTFYGFMVAIFYAYIAAKRAKN