Protein Info for CSW01_00975 in Vibrio cholerae E7946 ATCC 55056

Annotation: peptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 156 TIGR02256: conserved hypothetical protein" amino acids 22 to 152 (131 residues), 230.3 bits, see alignment E=2.5e-73 PF14464: Prok-JAB" amino acids 27 to 135 (109 residues), 60.6 bits, see alignment E=6.5e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to vch:VC0181)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (156 amino acids)

>CSW01_00975 peptidase (Vibrio cholerae E7946 ATCC 55056)
MMSDVELVFKDESDCLVVIMGHVVTRLLSYRQLHHLTPESAGVLIGERRGQHLVVCDISE
PGSGDIRQRCRVDRRGVHHQSRVNEAFERSAGTHLYLGEWHTHPEDRPFPSATDRHSWRR
NIVSDESMLLLIVGRKDFWLGKKERELITVFKKIES