Protein Info for CSW01_00920 in Vibrio cholerae E7946 ATCC 55056

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 325 transmembrane" amino acids 9 to 27 (19 residues), see Phobius details amino acids 99 to 119 (21 residues), see Phobius details amino acids 130 to 154 (25 residues), see Phobius details amino acids 187 to 207 (21 residues), see Phobius details amino acids 243 to 263 (21 residues), see Phobius details amino acids 289 to 313 (25 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 1 to 75 (75 residues), 36.3 bits, see alignment E=5.5e-13 PF00528: BPD_transp_1" amino acids 113 to 318 (206 residues), 132.3 bits, see alignment E=1.8e-42

Best Hits

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 100% identity to vch:VC0172)

Predicted SEED Role

"Peptide ABC transporter, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (325 amino acids)

>CSW01_00920 ABC transporter permease (Vibrio cholerae E7946 ATCC 55056)
MFSFLVKRLYQALIVMFVISLVAFAIQDNLGDPLRELVGQSVSEAERQALRDELGLNDPF
IIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVYSA
IHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWESGFF
TLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHALK
NTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLIF
VVTNTIVDLLYGLINPTVNLTGKGA