Protein Info for CSW01_00910 in Vibrio cholerae E7946 ATCC 55056

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 571 PF00005: ABC_tran" amino acids 24 to 182 (159 residues), 102.6 bits, see alignment E=1.1e-32 amino acids 330 to 483 (154 residues), 125.6 bits, see alignment E=8.7e-40 PF08352: oligo_HPY" amino acids 233 to 267 (35 residues), 31.5 bits, see alignment (E = 7.6e-11) amino acids 535 to 564 (30 residues), 19.2 bits, see alignment (E = 5.3e-07)

Best Hits

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein K02032, peptide/nickel transport system ATP-binding protein (inferred from 100% identity to vcj:VCD_001440)

Predicted SEED Role

"Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (571 amino acids)

>CSW01_00910 ABC transporter ATP-binding protein (Vibrio cholerae E7946 ATCC 55056)
MSLLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPP
GTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANM
QVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEP
TTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAK
VLGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTG
PLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIA
GLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRF
HKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDE
PTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTE
QLFTDPQHEYSKKLISLMPEFTGLRESTTAA