Protein Info for CSW01_00755 in Vibrio cholerae E7946 ATCC 55056

Annotation: cell division protein FtsX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 330 transmembrane" amino acids 53 to 74 (22 residues), see Phobius details amino acids 198 to 219 (22 residues), see Phobius details amino acids 255 to 280 (26 residues), see Phobius details amino acids 301 to 320 (20 residues), see Phobius details PF18075: FtsX_ECD" amino acids 90 to 182 (93 residues), 48.4 bits, see alignment E=1.2e-16 PF02687: FtsX" amino acids 205 to 316 (112 residues), 44.4 bits, see alignment E=1.5e-15

Best Hits

Swiss-Prot: 40% identical to FTSX_AERHY: Cell division protein FtsX (ftsX) from Aeromonas hydrophila

KEGG orthology group: K09811, cell division transport system permease protein (inferred from 100% identity to vcj:VCD_001606)

Predicted SEED Role

"Cell division protein FtsX" in subsystem Bacterial Cell Division

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (330 amino acids)

>CSW01_00755 cell division protein FtsX (Vibrio cholerae E7946 ATCC 55056)
MAVKPGNQKISKTTKSTKSKPRDVKRAKTDSFLAIHFKQAKASFAALWRRPLGNILTLAV
ISMALALPASLYLLSKNIASVAERVAEPSQLSVYLHIDTPEPRIIVLKDDLERRDEIAKV
KYISPQQGLDDLSQYAGFEQAISLLDNATLPAVLVVTPKVDSREQIQTLAKALQAEEGVT
DVRMDEDWFARLDAIRHLATIVVISLSSLMLMSVFLIVGNTLRFNVQANKEEIQTMKLIG
ATDAYILRPYLYSGMWFGLLGAVAAWLLTALMTILLNGAVEALAQLYDSRFRLIGLGWDE
SLLLLMLGVFLGCVAAKVSAKRHLKEIEPV