Protein Info for CSW01_00440 in Vibrio cholerae E7946 ATCC 55056

Annotation: DNA recombination protein RmuC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 510 signal peptide" amino acids 1 to 11 (11 residues), see Phobius details transmembrane" amino acids 12 to 29 (18 residues), see Phobius details PF02646: RmuC" amino acids 181 to 477 (297 residues), 361 bits, see alignment E=2.1e-112

Best Hits

Swiss-Prot: 100% identical to RMUC_VIBCH: DNA recombination protein RmuC homolog (rmuC) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: K09760, DNA recombination protein RmuC (inferred from 100% identity to vch:VC0082)

Predicted SEED Role

"DNA recombination protein RmuC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (510 amino acids)

>CSW01_00440 DNA recombination protein RmuC (Vibrio cholerae E7946 ATCC 55056)
MQWIFENQSALWSALVSAGATGVAIGWWVKQRYQLKTQLLEQQLEQQSHWHAQQIQQLNE
QLTTAQQELDELDALRDKNEFELKQSHGKLMAVLEKLRYFEAVKQERQQYADELNQVRAA
KAELESQLREQEARHQQQLVASQEKLQLLERAEERLKQQFEHLANQVFEHKTATVDVQNR
QSLEGLLTPLKEQLEGFKKQVNDSFNHEAKERHTLVHELRNLQRLNEQMAKEAVNLTQAL
KGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVSLQNEAGKRYQPDVIVHLPQNKQVVI
DSKMALVAYERYFHAETDSERDSALREHLLALRNHIRGLGQKDYHQLKGIQSLDYVLMFI
PVEPAFQVAIQADPSLVNDAMEQNIILVSPTTLLVALRTIDNLWRNERQNQNAQLIAERA
SKLYDKLRLFVEDMEGLGGALDKANQSYQGAMNKLVTGRGNAIRQAESFKQLGVEIKRSI
PQPLIERAQQAPDQENAPLVERHPIEDKVN