Protein Info for CCNA_03435 in Caulobacter crescentus NA1000

Annotation: peptidoglycan binding domain/FecR protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 457 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details PF01476: LysM" amino acids 45 to 90 (46 residues), 26.8 bits, see alignment 4e-10 PF04773: FecR" amino acids 134 to 233 (100 residues), 56.6 bits, see alignment E=3.1e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_03435)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3CEX3 at UniProt or InterPro

Protein Sequence (457 amino acids)

>CCNA_03435 peptidoglycan binding domain/FecR protein (Caulobacter crescentus NA1000)
MRPGYGGRGRLSMIKAAGVSFVVLALAGGASAWAQTPPAEPPVAYVVKPGDTLIGLGRAY
LNRPSDYRRVQKANGVQEPRRLRPGSQLNIDPNLLKSTPIAATLSAFTGPVQIETNGQRT
PARVGMPLSEGQWIITGPGAFATFELEDASRVTLPSNTRIRIAKLRQVLINNAPQRVFQL
EQGKGTISATPTPTPGARFEVRTPVSVSAVRGTEFRVGAGADKAQTEVLVGAVGVDAGAS
ASDNAPIQAGFGVSASADGVGAPVELLPAPKLGAGGQTQSDALVRFSLEPVKGAASYRVL
LARDAGFIDIFAEATTQTTSQQYPIVDFGQVANGTYFVRLTAIDPGGLEGFPADYSFDRD
LDTLDAAPPSDAREGKHRKFLFRWSSAGDGVRNYRFQMFANGDTQTPIVDQPGLTEPYLT
LTDLAPGAYAWRVTALRFKDGVMSEKQGPLQQLQIGK