Protein Info for CCNA_02172 in Caulobacter crescentus NA1000

Annotation: ABC-type transporter, permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 15 to 39 (25 residues), see Phobius details amino acids 277 to 299 (23 residues), see Phobius details amino acids 332 to 355 (24 residues), see Phobius details amino acids 366 to 391 (26 residues), see Phobius details PF02687: FtsX" amino acids 284 to 395 (112 residues), 54.8 bits, see alignment E=5.1e-19

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 100% identity to ccr:CC_2090)

Predicted SEED Role

"FIG00482216: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C964 at UniProt or InterPro

Protein Sequence (401 amino acids)

>CCNA_02172 ABC-type transporter, permease component (Caulobacter crescentus NA1000)
MSLALATLLYEWRRYMAAVVALAFSGLLVLAQVGMFVGIGKGFTAQIDRARADIMVLGPG
AKALFGGPSGLPRRMIPLVYSHPEVTQVAPLDGSGGRFQNILSPEQQAKEEARAKRAGKG
EKGGGGGTARKTEFVNVTVVDAIPGYVTVPTDYTQSMIEALRRPYAVAVDETALKRLGVK
KGDKALYNGKTIHIAVVTRGYPNIIQPTLVMSRDTLRMLGEADIGQRVGPLMVEIKDPAR
AEIVAAQLNKKADGKFRAWTRQELADANSNAMLEDQIIGIMLGFSAFLGLLIGVAITWQT
LRGAIMANIKEFASLRALGVSMGDLRNIVMELSFWVGIVGVFAAGLLTWGVSLLATMGGV
PMYFPPVLVAIVAGFLVAIAMLSGFLSLGVLKNSQPADLLR