Protein Info for CCNA_01277 in Caulobacter crescentus NA1000

Annotation: FAD-linked oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 468 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details TIGR01679: FAD-linked oxidoreductase" amino acids 50 to 466 (417 residues), 738.4 bits, see alignment E=1.1e-226 PF01565: FAD_binding_4" amino acids 61 to 190 (130 residues), 81.3 bits, see alignment E=5.7e-27 PF04030: ALO" amino acids 215 to 462 (248 residues), 166.9 bits, see alignment E=7.6e-53

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccr:CC_1219)

Predicted SEED Role

"oxidoreductase, FAD-binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C651 at UniProt or InterPro

Protein Sequence (468 amino acids)

>CCNA_01277 FAD-linked oxidoreductase (Caulobacter crescentus NA1000)
MISRRGALIAGGTGAAVVAGGAGAAYMVATGDKPEPPAPASVNAQGKVLWRNWSGVQHAY
PAARLAPKDEGELATALKVAQAPIRPVGSGHSFTALAPTDGTLVSLDSMSGIVGWEGDEA
IVRAGTRLGALGPLLAEKGRALANLPDINKQSLGGALGTATHGTGIKIPAMHGDVTGLRL
VTPSGKIIDADASNNPEIFQAARVSMGALGVISQVRMRTSANRRLRRRVWLEPFEEAMAK
ADGRWAQHRNFEFYAVPFTGLAVNITHDETDDPAEARGPDQDVEFLQALRGLRNLLGFAT
PLRKAAAKALLSSAKPESSVDEGWKLLSTERPVRFNEMEFHLPVENQLKALEEVMRTIET
ERPDVFFPIEVRRIAADDAWLSPFYAAPRGSVAVHAYYRDDFTFLYELIEPIFRRYEGRP
HWGKLHTLRGRQLEAIYPRWKDFLEVRQDLDPEARMLNPYLKGLFGLM