Protein Info for CCNA_00333 in Caulobacter crescentus NA1000

Annotation: LytTr DNA-binding domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 275 transmembrane" amino acids 38 to 57 (20 residues), see Phobius details amino acids 69 to 89 (21 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details amino acids 135 to 156 (22 residues), see Phobius details PF04397: LytTR" amino acids 187 to 272 (86 residues), 58.3 bits, see alignment E=3.7e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccr:CC_0330)

Predicted SEED Role

"FIG00483084: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C5M7 at UniProt or InterPro

Protein Sequence (275 amino acids)

>CCNA_00333 LytTr DNA-binding domain protein (Caulobacter crescentus NA1000)
MVGSVPQSSLRQSPASFRERLAGAVHASRMAMATRQSLRGFAVSAAAGVFLALIGAFGSD
AAPMGVRLAYWVGLCLAGAVVGTAVTHLIGHEGRADAHPWLYGALTAIGITLPFTAVVWL
VSELTFHGPPRPQTLSLYVGPVFIVTTGMTALNFLVQRRPVETHAAPVGAAAPRFLERLP
VKLRGAELHAVEAQDHYLRLHTSRGQDLILMRLSDAVAELEGIEGAQTHRSWWVAKSAVE
DARRADGRATLRLKGGLEAPVSRAYAKALREAGWF