Protein Info for CA265_RS25080 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: excinuclease ABC subunit A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 970 TIGR00630: excinuclease ABC subunit A" amino acids 14 to 929 (916 residues), 1335.5 bits, see alignment E=0 PF17760: UvrA_inter" amino acids 141 to 247 (107 residues), 109.5 bits, see alignment E=2.4e-35 PF17755: UvrA_DNA-bind" amino acids 297 to 394 (98 residues), 79.1 bits, see alignment E=9.5e-26

Best Hits

KEGG orthology group: K03701, excinuclease ABC subunit A (inferred from 63% identity to dfe:Dfer_3281)

Predicted SEED Role

"Excinuclease ABC subunit A" in subsystem DNA repair, UvrABC system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZBW2 at UniProt or InterPro

Protein Sequence (970 amino acids)

>CA265_RS25080 excinuclease ABC subunit A (Pedobacter sp. GW460-11-11-14-LB5)
MSNKSVDLGEQKDVEVYGARVHNLKNIDVSFPRNQLVVITGLSGSGKSSLAFDTIYAEGQ
RRYMETFSAYSRQFMGGMERPDVDKVSGLSPVIAIEQKTTSKNPRSTVGTITEIYDFMRL
LYARVADAYSYNTGEKMERMSEDQILQNIFNKFDGVAVNILAPVVKGRKGHYRELFEQIR
KQGYVKVRIDGEIKDITAKMQVDRYKIHDIEVVIDRLIIDVKDKKRLLDSLQIAMKMGKG
VIKISDKDNNVAHFSKFLMCPTTGISYDEPQPNSFSFNSPYGACERCDGLGYIFVVDKES
VIPNPKLSILNGGLAPLGEYRDIWMFQVLKALAKKYNFSLSTPIEKLGDEVINIILNGTH
DLINVAVEYNKWNVQNYNITFDGIIKMLEEQNEKRGEAAVDDMETFRKLKTCPECNGARL
KKESLHFKVDGKNIFELSSMDIFNLHSWFEKVDERLTDRQNIIAKEILKEIKARIGFLTD
VGLTYLTLDRTARTLSGGEAQRIRLATQIGSQLMNVMYILDEPSIGLHQRDNERLINALK
NLRDLGNTVLVVEHDKDMILEADWVIDVGPGAGIHGGTVVAEGTAAHILKSKTLTADYLN
GRKKIETPKTRRKGNGHKLSIVKATGHNLKEVSVDFPLGKFIAVTGVSGSGKSSLITETL
YPILNHHFFRAKKQPLPYEKINGLKEIDKVIEIDQAPIGRTPRSNPSTYTGVFSDIRNLF
VQLPEAKIRGYKPGRFSFNVKGGRCETCQGAGLKVIEMNFLPDVQVPCEECGGKRYNRET
LEVRFRGKSISDVLDMSIEDACNFFENIPIIYRKIKTLKDVGLGYITLGQSSVTLSGGEA
QRVKLATELSKKDTGKTFYILDEPTTGLHFEDINVLLGVLQELVDKGNTILVIEHNLDVV
KVADWVIDLGEEGGAGGGRILFEGTPEGLIQNPISLTGKFLKKEMDWEKGFEESGVSSPK
SEVKASRKKK