Protein Info for CA265_RS24560 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: DUF5007 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF16398: DUF5007" amino acids 59 to 359 (301 residues), 206.7 bits, see alignment E=3.5e-65

Best Hits

KEGG orthology group: None (inferred from 59% identity to shg:Sph21_2749)

Predicted SEED Role

"FIG00490691: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZCX0 at UniProt or InterPro

Protein Sequence (362 amino acids)

>CA265_RS24560 DUF5007 domain-containing protein (Pedobacter sp. GW460-11-11-14-LB5)
MKSIVKIEMVVVLFALIAFSGCKKLYDLPEEKDYLSNNVNFSNKVFEPIIGRTNLMGGFN
GDNSTQPITFEIVNARFGDGKPVTDIFQKVPTYVFIAPYTGLEKSLAEIEAKRKIEVHSL
FEIRSSGEFILWGSSTNQLIKPRPIDSTNFSQDTRFFDVKIKNTGGERLIRDLQIRPFRE
RPYEPSNDFNAYSGLPAPDPKFPLDKKLRDYIRPYLNNVVGATTNKNLISNNDQKDVVVY
IRPFTGGNGHSLRIKALNKDSVEINPSSFNETVWDKMIHGFNMQKTDKYVQYDVAYPIPL
VEIPTFYAPGGSRAKAQLSYSRGAFGGGRIIANFGVDFAIYQAGDWEIVFHFKTDNPKFI
SE