Protein Info for CA265_RS24460 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 792 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 18 to 91 (74 residues), 44.4 bits, see alignment E=3.5e-15 PF13715: CarbopepD_reg_2" amino acids 20 to 103 (84 residues), 50 bits, see alignment E=5e-17 PF07715: Plug" amino acids 115 to 216 (102 residues), 53.2 bits, see alignment E=7.7e-18 PF00593: TonB_dep_Rec" amino acids 354 to 755 (402 residues), 102.3 bits, see alignment E=1.2e-32

Best Hits

KEGG orthology group: None (inferred from 60% identity to fjo:Fjoh_3288)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZDQ0 at UniProt or InterPro

Protein Sequence (792 amino acids)

>CA265_RS24460 TonB-dependent receptor (Pedobacter sp. GW460-11-11-14-LB5)
MLLFSTFFCHGLFAQTYTVYGVVTDGTHQALEGITVKLSNTHVFAISDAQGKFSFQLANG
AYELQVNAMGFHRVKNKIVVNGKAMQLVLKLQPHSYLLNEVTIKNNAGTERRRSESLNVE
VVKADFIQRNLGGSLMNTLQRLPGIKTIGIGSGQSKPLIRGLGFNRVVVIDKGIKHEGQQ
WGADHGLEIDQFAAEEVELIKGAASFAYGADAIGGAIHIKAPAQPAPNSFGGEVNLIGKS
NNGLYGTSVRLFQRKEKLFFDGRFTYQNYGDYRVPTDTLYVYDFAVGLHKNYLRNTAGRE
TGIHFNTGYINEKFKSIFYLSNTFSKSGFFANAHGLEPRRVDADLHDASDRDLLMPYQKV
NHFKIINRTAFSLNRHAVEFELGYQHNFRQEYNHYVNHGFMPAVYPATMTIPIDLEREFD
KQVYSFNAKDQITLGKHLLQLGLNGELQDNLINGWSFLVPAFQQKSLGVYAYDKWKVSDK
LLLHGAVRYDLAKLDLFRYSDWFSSETNSGSMMQLIRANDLTRNFNSLVWSLGLNYNLDL
LEFKANVGKSFRMPIAKELGANGVNYHYFSYEKGDPNLNPEQSYQADFSVAFTTGKWSVK
LSPFFNYFPNYIYLNPTSAHDYFYGAGNQVFEYAQSEVMRYGGETQVKYQFSKQWSTELL
AEYLYAEQLSGDKKGYTLPFSPPASALFNVTYAPQKFLGSADAYFSLDYRLTARQNNIVP
PERKTAGYSLFNLQAGAKLQIGQYPLNINAQLQNVFNTRYLNHTSFYRLIGLPEQGRNFV
LTVKMPFNFHHH