Protein Info for CA265_RS24405 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 transmembrane" amino acids 14 to 37 (24 residues), see Phobius details amino acids 57 to 78 (22 residues), see Phobius details amino acids 91 to 108 (18 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 143 to 163 (21 residues), see Phobius details amino acids 175 to 200 (26 residues), see Phobius details amino acids 224 to 242 (19 residues), see Phobius details amino acids 267 to 289 (23 residues), see Phobius details amino acids 296 to 316 (21 residues), see Phobius details amino acids 323 to 342 (20 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 393 to 417 (25 residues), see Phobius details PF18943: DUF5690" amino acids 40 to 420 (381 residues), 553.9 bits, see alignment E=9.1e-171

Best Hits

KEGG orthology group: None (inferred from 45% identity to sli:Slin_3395)

Predicted SEED Role

"FIG01092256: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZCU5 at UniProt or InterPro

Protein Sequence (439 amino acids)

>CA265_RS24405 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MSLLHLARKKALNWPYWLITVLGGIAAFGCYTSMYAFRKAFASATFDHQEFLHIDYKVWL
VIAQMVGYTLSKFYGIRFISESGKSNRARSIIFLILFSWLALLGFALVPAPYNIVFLFLN
GFPLGMIWGLVFSYLEGRKTTEFMGALMSISLIFASGFVKTVARTLMSFASVSDYWMPFL
TGLVFLLPLFLFVFCLEVIPPPSKEDQELRTKRVPMDAKQRRKFITTFLPGIILTIIIYV
LLTCIRDMRDNFEVEIWNGLGIHNNHIYTQIDTLISVVVLVMMGLLILIKDNLKAFTVIH
IMIISGCLLIGVSTFFFDRGYIGPVSWMALLGMGLYMAYIPYNAIFFERMIANFHYKSNI
GFIMYVADSIGYVGSFSILLFHEFGETNTSWMYFFKQCLFAIPLIGGICSVLSLIYFRRK
TVATNKKMPTAEQLVLAGK