Protein Info for CA265_RS24170 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 30 to 48 (19 residues), see Phobius details amino acids 64 to 83 (20 residues), see Phobius details amino acids 94 to 112 (19 residues), see Phobius details amino acids 118 to 136 (19 residues), see Phobius details amino acids 157 to 174 (18 residues), see Phobius details amino acids 180 to 197 (18 residues), see Phobius details amino acids 223 to 242 (20 residues), see Phobius details amino acids 262 to 283 (22 residues), see Phobius details amino acids 291 to 309 (19 residues), see Phobius details amino acids 315 to 336 (22 residues), see Phobius details amino acids 348 to 370 (23 residues), see Phobius details amino acids 376 to 395 (20 residues), see Phobius details PF07690: MFS_1" amino acids 37 to 338 (302 residues), 66.1 bits, see alignment E=1.4e-22 amino acids 266 to 393 (128 residues), 37 bits, see alignment E=9.8e-14

Best Hits

KEGG orthology group: None (inferred from 59% identity to shg:Sph21_2896)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZBC8 at UniProt or InterPro

Protein Sequence (401 amino acids)

>CA265_RS24170 MFS transporter (Pedobacter sp. GW460-11-11-14-LB5)
MEESRQEQGILSKQEDKPVLAQSSPKQVRFAISAFYFMQGVCFASWASRIPTFKASMGLN
DAELGSILFALPAGQIITMFFSAKLTTHFGSKKMLVATAPLYAIALTFLALATTGWQLAA
FLVLFGITGNLCNIALNTQGVAGENYYGKPIMSSFHGAWSIGNLTGALIALGLVNLKLGM
YSHFWIIALLSLSNVAFNRKKLLNYKKPDAVVEKTKFFTMPQGILVLLGVIAFCSMATEG
TMFDWSAIYFEDVVKLPHNKAIIGYASFMFMMASGRFLGVFLIGKFGRKNLLQISGAIIS
IGMALAVIFPNIIVAIFGFMLIGLGVSSIVPMVYSIAGNNKKVPAGKAITMVSSIGYFAF
LFGPPLIGYVSQLSSLRYSFGIISVFGLLITFLITKIKAIN