Protein Info for CA265_RS23655 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: glycosyl transferase family 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1134 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 711 to 735 (25 residues), see Phobius details amino acids 994 to 1015 (22 residues), see Phobius details amino acids 1021 to 1046 (26 residues), see Phobius details amino acids 1058 to 1077 (20 residues), see Phobius details amino acids 1089 to 1106 (18 residues), see Phobius details PF00704: Glyco_hydro_18" amino acids 105 to 391 (287 residues), 58.9 bits, see alignment E=3e-19 PF01522: Polysacc_deac_1" amino acids 480 to 580 (101 residues), 97.2 bits, see alignment E=2.8e-31 PF13641: Glyco_tranf_2_3" amino acids 756 to 977 (222 residues), 110.9 bits, see alignment E=3.5e-35 PF00535: Glycos_transf_2" amino acids 758 to 922 (165 residues), 128.2 bits, see alignment E=1.3e-40 PF10111: Glyco_tranf_2_2" amino acids 758 to 961 (204 residues), 46.7 bits, see alignment E=1.2e-15 PF13506: Glyco_transf_21" amino acids 821 to 975 (155 residues), 56 bits, see alignment E=1.5e-18 PF13632: Glyco_trans_2_3" amino acids 838 to 1028 (191 residues), 84.1 bits, see alignment E=5e-27

Best Hits

Predicted SEED Role

"Glycosyltransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZBE1 at UniProt or InterPro

Protein Sequence (1134 amino acids)

>CA265_RS23655 glycosyl transferase family 2 (Pedobacter sp. GW460-11-11-14-LB5)
MSGKQIFQTETKRRWHTFTWVSRTFFLVFIGAIICVVYTLSSVQAPNLPFINTNTPLTEK
QLEKLKKSQQYRDFTIEKSKLQKIKRDREHRILTHRGNSKRINMAFYVSWASTVSKSLPD
LKRNIGHLDMVATESFFLNGDSIVDKADTAALKVIHKAKKSAIAVVSNYNKDHWDGAAVR
RLLNDQPAQQKLIYDLIAITKKYGYRGINIDFEELNLENSDSFNAFMKNLYGQFHAEKLI
VSQDISPENDDYKPEILQKYNDYIVLMAYDQHTEQSNAGDISHQEWVEEKLDDICSKVDA
SKVILALACYGYDWPQNSVGKSVTYEDAMTSAVNYKSKINYDPASANLNYTYNDGSGIKH
EVYFTDAATYFNLIRKADDWDIAGIALWRLGSEDKRLWSFISNDLSLDTLKKKPFDLRKI
ASLNMGGISYLGDGEILDLISTPTPGSVKFTLKKDNFSIADQKYTRLPEQYVIKRFGEAD
KKIALTFDDGPDPVYTPQVLNILRQEKVPGCFFVVGIMAEQNMELLRQEYNDGYEIGNHT
FFHPDMSAIGPRRVKFELNATRRLIEAVTGHSTILFRAPFNADAEPQNISEILPVAQSRK
ENYINVGEYIDPEDWEPGKTADQIFNEVVKQQDNGNILLLHDAGGNREATVAALPRIIKF
FKAKGYTFTTVGDLMGKKRSELMPAVKSTANSGFSGSGDYFFINFFYYGNMILNIIFSVA
IVLAILRTIFIAYLAIRQRKRAKQHAGKLITNPSAKVSIIIPAYNEEVTAVQTINSLLKT
TYPDFELIFVDDGSKDKTFEIIDQHFGNHPQVKVFRKANGGKASALNYGISKASADFVVC
IDADTQLKDDAVTELMRYFYSDQIAAVAGTVKVGNANNIITKWQSIEYITAQNMDRRAFD
LLNTITVVPGAIGAFRKNVIVEIGGFTIDTLAEDCDLTMRILKAGYRVKNCDTAIAYTEA
PETVNMLLKQRFRWSFGVMQSFWKNRKTLLNKKYGYFGMVGMPNILIYQIILPLFSPLAD
LFMFISLISGLFSLSAINNLTLTGFSGILSLHNGFGQVLFYYIIFIVVDMIFAAMAFRME
KEKYTNLLYIFPQRFFWRQLMYVVLFRSFRKAIKGELETWGTLKRTGNVKEQLA