Protein Info for CA265_RS23435 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 251 transmembrane" amino acids 28 to 47 (20 residues), see Phobius details amino acids 67 to 87 (21 residues), see Phobius details amino acids 97 to 119 (23 residues), see Phobius details amino acids 125 to 144 (20 residues), see Phobius details amino acids 156 to 174 (19 residues), see Phobius details amino acids 180 to 197 (18 residues), see Phobius details amino acids 224 to 247 (24 residues), see Phobius details PF01027: Bax1-I" amino acids 23 to 247 (225 residues), 163.5 bits, see alignment E=3e-52

Best Hits

KEGG orthology group: K06890, (no description) (inferred from 59% identity to phe:Phep_3782)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZAY5 at UniProt or InterPro

Protein Sequence (251 amino acids)

>CA265_RS23435 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MEQQNYQYQDNSVFVQEKSASKRFFGNVFLWMFVALAVSTVAAYFIASTPAVLDYLLSYN
PQTGKGGFTVLGYIAIFAPLGLVFLMGAGMQRMSYQALIGVFLLYSILTGVMLSFILLTY
SLPSVVISFAAAAAIFAVMAIMGYTTDTDLSKFGPILFAGVIGLVIISIINMFLGSSTLG
YIMGFIGVAIFTALTAYKVQELKRIGEGLDENGNTLGVNESKKLAIMGALSLYITFINLF
LSLLRIFGNRR