Protein Info for CA265_RS23345 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 147 to 167 (21 residues), see Phobius details amino acids 198 to 219 (22 residues), see Phobius details amino acids 331 to 354 (24 residues), see Phobius details PF03929: PepSY_TM" amino acids 13 to 354 (342 residues), 214.4 bits, see alignment E=1.6e-67

Best Hits

KEGG orthology group: None (inferred from 44% identity to dfe:Dfer_1313)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZBT6 at UniProt or InterPro

Protein Sequence (362 amino acids)

>CA265_RS23345 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MFRTGFKKIIYLLHLWLGLSSGLVVFVIGLTGAIYSFSDELKAVLYHDRLYVDIPHGAKK
QSFDQLLFVAQKKFGGLKKISRVEIQQSPDRTYMFRAYKAEKYFEKVYLNPYTAQIVFHE
DANKEFFNVVLSIHRTLLLGDVVGHFIIRWSVVCFVILLLSGIVLWWPKKWKINFWKQKL
QVKWDAKAKRLNYDLHQVFGFYAFLILLIISLTGLMWSFDLVSDKKVKIFSDTTSLAGPT
PNHLILSNTKSLSKEASYLLYNLPVTKGGTVNVSAYLDPQRIHQKVQYRFDRYSGKLLLK
GKSFSSLPALDKVKALNYDLHTGSIFGFWGKLLVFFAGLITASLPITGFLIWLWRKKAAN
NR