Protein Info for CA265_RS23035 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: four-helix bundle copper-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 114 PF03860: DUF326" amino acids 87 to 105 (19 residues), 20.6 bits, see alignment 1.8e-08

Best Hits

Swiss-Prot: 47% identical to YHJQ_BACSU: Uncharacterized cysteine-rich protein YhjQ (yhjQ) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 57% identity to psa:PST_3606)

Predicted SEED Role

"Ferredoxin" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZAX3 at UniProt or InterPro

Protein Sequence (114 amino acids)

>CA265_RS23035 four-helix bundle copper-binding protein (Pedobacter sp. GW460-11-11-14-LB5)
METRNNYGLIQALLDCALACEHCASSCLKEEDINMMIDCIKLDRDCADICTQAARLLQRD
SIIGHQYLLLCEEICRLCAAECGKHDHEHCRQCAVACEECADACHANHEPIHQD