Protein Info for CA265_RS22985 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: helicase SNF2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 963 PF04851: ResIII" amino acids 500 to 659 (160 residues), 34.2 bits, see alignment E=4.8e-12 PF00176: SNF2-rel_dom" amino acids 504 to 786 (283 residues), 249.8 bits, see alignment E=6.4e-78 PF00270: DEAD" amino acids 528 to 661 (134 residues), 35.1 bits, see alignment E=2.3e-12 PF00271: Helicase_C" amino acids 803 to 908 (106 residues), 80.2 bits, see alignment E=2.8e-26

Best Hits

KEGG orthology group: None (inferred from 78% identity to phe:Phep_4161)

Predicted SEED Role

"FIG01093685: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZAW3 at UniProt or InterPro

Protein Sequence (963 amino acids)

>CA265_RS22985 helicase SNF2 (Pedobacter sp. GW460-11-11-14-LB5)
MLRVDSSKACKVVYSLCKHEYLGYLIEPHVVQLNPQGDFSFTYQRIFTHTAEEFNACLSD
IDYKLIKILDDIEQDSLIKKYYKKLIRPTEFFTKIFDNKFYENVRPKIEKKLAEALELLK
VKNELYVMDKDGWPVERKIELADEPASILFHFRRNETETRYFPTIKYQNLRIEFMFKEAQ
IISNKPAWLLLNDVLYFFDQDIEGKKLQPFLNKRFIAIPKTTEATYFEKFVAPLIEKHHV
YAEGFEIRTEQFEATPVIKVLYVDGGLSQIQLYFKYGEYIFPVENAHKVTVRLEKTADNY
IFHRIKRSAEWEKKQFNLLLSLGLKKTSSLFSNLEVISADENPSYAAINWVNEHIELLQA
AGYEIEQATGQKKFVFGASKIDLEVKEGNDWFDIHAVVWFGKYQIPFLSLKQHILHKKRE
FLLPDGEVAIIPDKWFTQYGSLFSLAEAGKTLKLKKHHIGLINDLAEDSLANVTLERKLQ
RLSDFEDIADTQMPVHFKGSLRDYQKAGYNWFSFLREYNFGGCLADDMGLGKTIQTLAML
QKVKEDDQLLETQTTSLIIMPTSLIYNWLTEAKKFTPKLKILAHTGTNRNKDVANFANYD
IIITTYGVTRVDVDELKNFYFNYIILDESQNIKNPASKSFKAVRSLKSKHKLILSGTPVE
NSVSDLWSQLTFLNPGLLGTQAFFYEEYVQAIEKKKDEEKARKLQSIIKPFVLRRTKEQV
AAELPPKTEQVIYCDMSEDQAAYYEKTKSAYRNDLLQSMDDGTFAQKQVQLLQGLTALRQ
LANHPIMIDGAYVSDSGKFENVIHTLDNVLKGGHKVLVFSQFVKHLDIFKKHFEAEHIPF
AYLDGATRNRGEIVSEFQQNTELKVFLISIKAGGVGLNLTQADYVFILDPWWNPAVEQQA
IDRTHRIGQDKKVFIYKFIAKDTVEEKILALQNRKKSLANSLITTEESFFKSLSKEDIRD
ILN