Protein Info for CA265_RS22840 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1061 PF13715: CarbopepD_reg_2" amino acids 25 to 104 (80 residues), 59.5 bits, see alignment 3.9e-20 PF13620: CarboxypepD_reg" amino acids 25 to 92 (68 residues), 40 bits, see alignment 6.2e-14 TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 25 to 1061 (1037 residues), 910.6 bits, see alignment E=1.7e-277 PF07715: Plug" amino acids 115 to 219 (105 residues), 72.9 bits, see alignment E=4.5e-24 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 196 to 225 (30 residues), 61.2 bits, see alignment (E = 6.2e-21)

Best Hits

KEGG orthology group: None (inferred from 61% identity to dfe:Dfer_0300)

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZBT7 at UniProt or InterPro

Protein Sequence (1061 amino acids)

>CA265_RS22840 SusC/RagA family TonB-linked outer membrane protein (Pedobacter sp. GW460-11-11-14-LB5)
MSAKASLHEKEPFDFYRPPLQDIIVKGQVTDAKGPIPGVSVKLKGGAATTVTDGSGKFSI
KVPEDATLVFTYVGYVDQEIQVKNQTSINVRLVENNQNLTEVVVVGYGTQKKAVVSGAVA
AVKGSELAKSSSVNLTNSLAGRLPGVTALQGSGEPGYDGSTIRIRGINSLGNNNALIVID
GIPNRAGGIERLNPNDIESVSVLKDASAAIYGSQAANGVILITTKLGKSGKPQFSYDFSY
GLQQPTRIPKMANSTQYAEILNELNIFGSDLNPNEWSAAWNSFKTTGTYLSTGGKTINAA
YKPDEIRKFGDGSDPLRYPNTDWFKTTFQNWSPQQRHNVQINGGSENVKYLLSLGYLNQD
GYYKNSATGYQQYDMRFNLEAKLSKYITTTLGVSAREEDRNFPTVSAGDIFRFLMRGRPN
EIAIWPNGLPGRDIEYGYNPVVSTTDLTGTNKDVRDYFQTTGKAEIKIPGVDGLKVTGTA
AIDKYSGRQKNWQLPWTLYDWDKKTFAADGVTPVLAGTVRSQYTDPRLRETAGGQLAINL
TGMVNYDKKISDHTIGLMAGVTRETVNNDGFTAFRRYFISSSVQELLAGDEREQSLGNNP
GDPNNLFKRARLSYFGRVGYNYKEKYLAEFLWRVDGSYIFPTDRRFGFFPGVSVGWRLSE
EPFFKDNVKFVNNLKLRASWGQMGAEAYFGDALQEYQYLSLMNFGTYTFNDLVTKTLTEG
KVPNFDFGWEVANNTNIGLDASFLNNKLSLEFDYFYNKRTNILISRGSSVPESSGITDRL
PPVNLGKVNNKGFEFKLSYNDQVGDLNFGVSVNGGYAKNKIVFWDETPGAPEWQRSTGRV
TSSWLVYDYDGVFKDQAEADANKQKYSALTSNLRAGDMKFKDRNEDGKINADDKIRLDKN
GTPTFTGGVNFNVQYKGFDLSVLIQGATGGMQIVGLTESGDIGNFLEWSYLNRWSIDNPS
SVNPRLSNRGATYYTDSNNALNNTYWLRSNNYIRLKNVELGYTLPTTWVEKVGLNSVRVY
ANGLNLATLDKIKIWDPESTNTSGQYYPQARVINMGIKATF