Protein Info for CA265_RS21935 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1033 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 37 to 114 (78 residues), 51.2 bits, see alignment 2.7e-17 TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 37 to 1033 (997 residues), 576.8 bits, see alignment E=5.6e-177 PF13715: CarbopepD_reg_2" amino acids 38 to 126 (89 residues), 59.7 bits, see alignment E=4.6e-20 PF07715: Plug" amino acids 138 to 266 (129 residues), 55.4 bits, see alignment E=1.6e-18 PF00593: TonB_dep_Rec" amino acids 480 to 989 (510 residues), 77.5 bits, see alignment E=4.1e-25

Best Hits

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZAY1 at UniProt or InterPro

Protein Sequence (1033 amino acids)

>CA265_RS21935 SusC/RagA family TonB-linked outer membrane protein (Pedobacter sp. GW460-11-11-14-LB5)
MEKSYLKWSPGFFAILLIPFLLLLFTGMAQAQNKRYTISGKVTDASNNSPVPGAVVKIMN
TNLVTSTSSSGTYSFSVDLAPGKYQIQISFIGFKSNIESVILGDNTTVQANSALSGDAVG
LDEVIVTGTSQGTTRKQLGSYVSTVKGDDLNKAPSGNALASLQGKTPGAQISQNSGDPAG
GISVRLRGVSSVNSSSEPLYIIDGVIVNNSTTRVTNTSANYDGGNFVGSIGQNRMVDISP
SDIDHIEVLNGAAAAAIYGSRANAGVIQIFTKRGKTGEPQVSFSTSLTISELRKQIEVNQ
APVRFGDNANSVTQDVIQTVPPTPGATPVLQTAKTPVTRYNYQDYIFHTGVGTDNSVSVS
GGNDNTKFYTSAGYFLNQGIIKNTDFKRMNFRANLDQKINNWAKMTAGFNYIHSDANEKP
DGNSFFSPMNSVTIIGNFHDIFARDVLGNLQAVGERGRVNPVSVIEDIKQRQFTNRIIAN
LGLKLNPVKNLTIDYTMGVDNSIQNGTTFIPPFTYNVSTGFYGGGASLDPSLNGYASAAN
ATTTLFNNELNFTYDAKISDLLSSTTQLGGSYQYQKDLYSLLNGRGLAPFVQVVNGASTV
LANVDSRSEFSISGAYLQQNFKYKDHLFVTGAIRVDQSTVFGEDNRTQFYPKANVSYVLS
SADYWKDFGVSSWWNAFKLRAAYGQSGNLTGIGAYDRFNIYSPSALNSKTSLTSLATLAN
TGVKPERQKELEIGTDMSFFNNRLGLTFSYYNKNVTDLLLPVVIAPTTGFSSLLDNISGT
LKNKGIELMLTGVPVKTEDFSWTSTLIYNRNRNKIEGSGAQRLISTNAGAPVSITDGYPV
GVFYGTYFERTSTGDIATNPAGIPLTAGQAAGNVLRKVIGDPNPDYTGSFVNDFTYKKLS
LHIQLDAVQGGDVWNADWRTRQGVGNGKVAEAEQLGQLPRGYVAGAYNVEEWRIDDGSFV
KLREISLSYNIGKVKFVKDLTINISGRNLVSWDNYKGYDPELNAGGQSTILRNIDFGAVP
IPRTFSFGLQAKF