Protein Info for CA265_RS21230 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1028 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 33 to 111 (79 residues), 53.5 bits, see alignment 5.3e-18 TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 34 to 1028 (995 residues), 494.5 bits, see alignment E=8.6e-152 PF13715: CarbopepD_reg_2" amino acids 34 to 121 (88 residues), 44.1 bits, see alignment E=3.4e-15 PF07715: Plug" amino acids 136 to 254 (119 residues), 36.9 bits, see alignment E=9e-13 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 231 to 259 (29 residues), 48.2 bits, see alignment (E = 7.2e-17) PF00593: TonB_dep_Rec" amino acids 419 to 902 (484 residues), 44.6 bits, see alignment E=3.8e-15

Best Hits

KEGG orthology group: None (inferred from 48% identity to cpi:Cpin_3288)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZAJ0 at UniProt or InterPro

Protein Sequence (1028 amino acids)

>CA265_RS21230 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MIKIFTKRNVPKRVLLLLLCLYLGLSAYAQTPSVKGVIKDAKETIVGATVIAQNVQTGIK
TTTSSDKNGVFSFPRLAAGPYKFTINFIGYETKTVTGEVRDGGTFSLSVVLKESSTSLDK
DVIVTGTGITRNKNSFTGVTATFSGETLKSIGNNNIIQSLRTLDPSFILMENNLAGANPN
VLPVIEVRGKTSVPTATLKDQFGTDPNQPLFILDGFETTLQNIVDLDMNRVASVTILKDA
ASTALYGARASNGVVVVETIRPKAGQLQFTYSNDFRVESPDLSGYNMMNAAEKLQFEKLA
GRYNYFVSNATYQQIGLDQIYNNHLAAVKRGVDTYWLNEPVQTGITENNSIYAQGGDQAF
TYGVGLNYKTQSGAMKGSGRDTWSGNINLTYRKGKFNINNILYVRGYSSTDSPYGSFSNF
VNANPYYIKDPSQRYLEVSNTSTYSELKVRNPLYDASLPNTSTAENLEVQNNFQLNYDIS
SDLQIRGGLQLVKGSVTAVSFLAPENSVFEEVGALQRGKYTNSKTDNFSYQGNMLLTYGK
VFGGKHSVTANARAEINNRDFRAVGFVAEGFPEGSTGNPRFAYSYQSNAAPTASSSVYRT
ANATLSANYAYDMRYLFDFSYRLDGSTAFGKNKQFSPYWSSGIGWNLNREHFFANTRWIN
RLKLYANIGVTGNQNYGNITSVSVYNFNSSTNYNQFGQGVSLATLGNPDLKPQKTTQISA
GLDYSLFNDRLFGYVSVYNKRTDPLVVAVDLPSSTGVFNYPLNVGILNNKGMEFKLNYAP
IYNIEKRIVWVVGASGNLNKSKYDGFGNALRSLNKQQENNKTLLRFTDGYSPDDIWAAKS
LGIDPATGREMFLRNDGQYTFDYSLGSVQAVGNTNPVIEGIFTSTFSFKGFNLGVYLRYR
LGGDIFNTALYNKVENITYTNIASNQDKRALYDRWQKPGDVAQFKGISQTATTPMSSRFV
QKENTISGESISMGYTFDRSAWLKKFGMRSLNLSALTNDIFRISSVKRERGIDYPFANTV
SFTLRVSF