Protein Info for CA265_RS20930 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 319 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF14903: WG_beta_rep" amino acids 34 to 68 (35 residues), 42.3 bits, see alignment 3.1e-15 amino acids 70 to 102 (33 residues), 46.9 bits, see alignment 1.1e-16 amino acids 103 to 136 (34 residues), 46 bits, see alignment 2.3e-16 amino acids 138 to 171 (34 residues), 43.9 bits, see alignment 1e-15 amino acids 171 to 205 (35 residues), 38 bits, see alignment 6.8e-14 amino acids 205 to 239 (35 residues), 39.3 bits, see alignment 2.7e-14 amino acids 239 to 272 (34 residues), 37.8 bits, see alignment 8.1e-14 amino acids 274 to 307 (34 residues), 40.7 bits, see alignment 1e-14

Best Hits

KEGG orthology group: None (inferred from 38% identity to cbb:CLD_2892)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z9U7 at UniProt or InterPro

Protein Sequence (319 amino acids)

>CA265_RS20930 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKMRQLIATALLCTLGITGYAQNLKSKRNDKGKYGFIDRTGKEVVPFTYDEVGYSFKEGI
INVKLNGKHGFIDESGKVVIPLIYEDSRSFEEGLIAVKQNGKFGFIDKTGKVIIPFKYDN
ATYFKEGFGKVELNGKEGYIDKTGKEITAIKYDVAFDFYGGFAWVRLNDKYGFVDPAGKE
ITALKYEGVNSFKDGFAGVKLKDKWAFIDKTGKEITKFKYDYVKDFSDGVAPVERNKVYG
AIDKNGNEIIPFKYRFISDFEGGLAKAGLNGKEGFISKTGEEVIPIKYDAVGEFKNGAAI
FRLNGRWGSMDKTGKEITQ