Protein Info for CA265_RS20765 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: mobilization protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 677 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 63 to 82 (20 residues), see Phobius details amino acids 94 to 113 (20 residues), see Phobius details amino acids 128 to 145 (18 residues), see Phobius details amino acids 319 to 336 (18 residues), see Phobius details PF14293: YWFCY" amino acids 45 to 152 (108 residues), 35.5 bits, see alignment E=2e-12 PF02534: T4SS-DNA_transf" amino acids 172 to 567 (396 residues), 69.2 bits, see alignment E=6.5e-23 PF10412: TrwB_AAD_bind" amino acids 289 to 561 (273 residues), 59.3 bits, see alignment E=6.6e-20 PF12696: TraG-D_C" amino acids 466 to 578 (113 residues), 57.6 bits, see alignment E=2.7e-19

Best Hits

KEGG orthology group: None (inferred from 51% identity to bsa:Bacsa_3678)

Predicted SEED Role

"Putative mobilization protein BF0133" in subsystem Conjugative transposon, Bacteroidales

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZAU1 at UniProt or InterPro

Protein Sequence (677 amino acids)

>CA265_RS20765 mobilization protein (Pedobacter sp. GW460-11-11-14-LB5)
MEETREQQRFHRFLQFFVYFSLFLDFLVFVYGTKIGSIPQAERIGFSRFMARLARLPMYQ
DPFFSKSFLLLLLCLTSIGTLSRKNKDIDIRKSIVFPLVLGLISLFGSTYFLGSKGKEIL
PMTTWDNIIYVLGSFLGTLLVHISLDNISKVIRSKLGKDKWNVEGESFMQATKPIDSPSS
VNIPSLFYFRGKVHRGFINIENVFRGTLLIGNPGSGKSFGVVMPFIRQLLAKEFCICLYD
FKFHDLAEVAYYHYLLAKKKGNCKDHDFHVINLTKVERSRRINVLRPDYIRTLADASETA
EALVEALKKGDKSGGSDQFFTQSAVNFLASCIYFFAQHQSGRYSTFAHVLSFLNCSYDEI
FGVLFTNKELTSLLSPFYTAYKAKAFDQLEGQVGTLKIFISRLATKETFWVFSGDDFDLK
ISRPENPSILVLANDPNTQNINSACYSVVLNRLTRLINSKGNLPSALIIDELPTLFVHRI
ENLIATARSNKVAVLMGLQEIPQFQQQYGKDTANTITAVVGNVLSGAVRNKETLEWLERL
FGKVKQQSESLSIDRSKTSLSLSEKLEPLIPAGKIASLRTGELVGVLASDAVKEYSGEFE
TSAINCRVNLDMKAIEIEKENYPELPIYYDFGGNKEAILREHFFKITADVAAMVASFNLP
QAPAKPAAAKASMKATQ