Protein Info for CA265_RS20740 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: plasmid transfer protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 380 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details transmembrane" amino acids 59 to 78 (20 residues), see Phobius details amino acids 90 to 111 (22 residues), see Phobius details amino acids 204 to 222 (19 residues), see Phobius details amino acids 227 to 255 (29 residues), see Phobius details amino acids 264 to 287 (24 residues), see Phobius details amino acids 316 to 339 (24 residues), see Phobius details amino acids 344 to 362 (19 residues), see Phobius details

Best Hits

Predicted SEED Role

"Conjugative transposon protein TraJ" in subsystem Conjugative transposon, Bacteroidales

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z9K8 at UniProt or InterPro

Protein Sequence (380 amino acids)

>CA265_RS20740 plasmid transfer protein (Pedobacter sp. GW460-11-11-14-LB5)
MLDKLFAGTAGFFVQSAPVDVPDSFRDTFNFLQGNGVYEEGTMHFLKEMKNTIWTHYDAF
IADAQALCAIFMLIFFAIKSYEMISGDKKLEVMPLLRPFALVMVILWWPTFTRVVAYPTD
LVAAKTEAMFDGSQTVVNDLRIQRAKLMVELADQLLTVQAQTETAKQEADTWYENAWESV
KSSVKEGFSEVWNPIVEMRNRLQVGLQLLATSLVETLAIWILRIAVYVIFIIQIIFSTIL
IILGPFSVAVSILPAFRDSFTTWIARFISVNLYSGIAYLVMYVASLFQHYAMEAEITRYQ
ELVGTSGADMEKLSVFAGNGLLSFGIVVGTFVIGALTMLTVPSISTWIVSTSGISSAASS
MGRGASTMGRMAAGAMGGGH