Protein Info for CA265_RS20705 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: conjugal transfer protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 103 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 47 to 67 (21 residues), see Phobius details amino acids 79 to 101 (23 residues), see Phobius details PF13572: DUF4134" amino acids 12 to 101 (90 residues), 118.7 bits, see alignment E=5.3e-39

Best Hits

KEGG orthology group: None (inferred from 46% identity to lby:Lbys_0169)

Predicted SEED Role

"Conjugative transposon protein TraE" in subsystem Conjugative transposon, Bacteroidales

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZAE1 at UniProt or InterPro

Protein Sequence (103 amino acids)

>CA265_RS20705 conjugal transfer protein (Pedobacter sp. GW460-11-11-14-LB5)
MTAKQKKLFSLGLAMVLAGHSFAQTAGGTTGINAATSSLTSYVDPISTLTLAIGAVVGII
GGVRVYIKWNSGDQDINKDIMGWGGSCLFLVLVSVFIKAFFGV