Protein Info for CA265_RS20635 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1126 signal peptide" amino acids 1 to 44 (44 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 129 to 1126 (998 residues), 640.9 bits, see alignment E=5e-196 PF13715: CarbopepD_reg_2" amino acids 130 to 206 (77 residues), 47.8 bits, see alignment 2.3e-16 PF13620: CarboxypepD_reg" amino acids 130 to 188 (59 residues), 34.8 bits, see alignment 3.7e-12 PF07715: Plug" amino acids 222 to 360 (139 residues), 54.6 bits, see alignment E=2.9e-18 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 336 to 366 (31 residues), 60.3 bits, see alignment (E = 1.1e-20)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z9T8 at UniProt or InterPro

Protein Sequence (1126 amino acids)

>CA265_RS20635 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MYKNFTKFWCSHFSCIRRMLMIMKLTTTILISALLQVSAAGMAQHLTLNKKNVSLAQVFK
EIRKQTGYSILWESEKFDANGKVSVEFKNSSLKEVLNFIINSDKYSYLIDEKTIVIQPKD
KYELNDQIVVSGKVVDENGSPLSGASVVLKANGKGTSTTVDGTFTMSGVDDGAILVIKYI
GFDPKEVKAARELGTIKLNLATSELDAVQIQAYTTTSKRLSLSNSVSVRAKEIEDQIVSN
PLLALQGKVAGIQIQQVSGNAGATINVKIQGVSSFRGNSSPFFVVDGVPYSSTTMVGTGN
INLWGEATPTALGVAGNNAGISYGSGNPLSFLNPDDIESIDVLKDADATAIYGSRAANGA
IVITTKRGKPGTLQIDFSSRNGWNQATFGADFLNTEQYLGIRNEAYRNSNAVISATNYDL
NGIWDKEKFTDWQKELIKTTGYDDASLSVSGGTLNSSYRLNLTGNRQNSAYARNFRNDNI
ALSISLNTASANQKFKLGIVGNYLNGFNNLPSLNQTTAGSFLYLLPPNAPNLYNTDGTLN
WDMDPTGTISRFRNPLSTYLTNPFEVKTNNFTSNITASYNIVNGLDFKTSFGYNRLDQQE
FTSNLAESVAPTARNTFIRSGSYRFTNTNNYIIEPQILYNHQFSGHKLNFLLGATYNKSQ
GETSGITGSGQSSDSQVKNLSASSSFNQTGSSFYEYRYNAGFFRLDYNFKERYLLGLSAR
RDGSTRFGPDNRFANFWSAAVGWIVSEETLVKEKLPWLNFFKLRANYGLTGSDGVGDYTF
MDLYSANTFYLPYQNVVGFAPGRLLNSKLQWEEKRSLNIGFDANLLNNRVTLGINYNRNR
SSNLLQSLNLPVTAGFASVDVNFDALVQNTGWEYTIGVKLLAAKAFKWNVNANLTVPTNK
LLSLPSLDKVNRVAGFGYHIGLPLGTTTMNTYMGVNPLTGLEVLEDINGNPVATAGSTAN
MKTTLRNLYTSPFYAGLQSSFEYKGLSMNLSFDFNKQLKPRYFFVSSRPGRDAYNQPEIA
YSLNRWENPGDIAVIQKYSTLLGSGLLTQTEAFYEDATYLRLTNIAISWNLPKSWTGIIG
MKSSRIGINAQNLFTLSKYSGPDPITGPSGVMPPMRVIVLNVRASF