Protein Info for CA265_RS20425 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: magnesium chelatase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 351 TIGR00368: Mg chelatase-like protein" amino acids 6 to 351 (346 residues), 461.1 bits, see alignment E=2.2e-142 PF05362: Lon_C" amino acids 15 to 152 (138 residues), 23.9 bits, see alignment E=1e-08 PF13541: ChlI" amino acids 20 to 141 (122 residues), 164.3 bits, see alignment E=3.7e-52 PF01078: Mg_chelatase" amino acids 193 to 351 (159 residues), 254.2 bits, see alignment E=2.7e-79 PF07728: AAA_5" amino acids 216 to 351 (136 residues), 41.4 bits, see alignment E=5.2e-14

Best Hits

Predicted SEED Role

"MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z9F0 at UniProt or InterPro

Protein Sequence (351 amino acids)

>CA265_RS20425 magnesium chelatase (Pedobacter sp. GW460-11-11-14-LB5)
MLVKTYGSAVYGVNALTITIEVNISSGTKYYMVGLPDNAVKESLQRVASAIKVSGYHMPR
QKIVVNLAPADIKKEGSSYDLPIAIGILAASGQIPAEELEDYFIMGELSLDGSIQPIKGA
LPIAIQAQQESFKGFILPRQNVREAAIVNDLVAYGVENLAQVIAFFNKTETLEQVKVNTK
EEFLKNINNYEHDFADVKGQENIKRALEIAAAGGHNVILIGPPGAGKTMLAKRLPTILPP
LNLNEALETTKIHSVAGKLSAADALMTIRPYRSPHHTISDVALVGGGINPQPGEISLAHN
GVLFLDELPEFKRTVLEVMRQPLEDRKVAIARARFSVEYPASFMLVASMNP