Protein Info for CA265_RS20320 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 977 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 23 to 977 (955 residues), 748.2 bits, see alignment E=1.9e-228 PF13620: CarboxypepD_reg" amino acids 24 to 87 (64 residues), 45 bits, see alignment 2.3e-15 PF13715: CarbopepD_reg_2" amino acids 25 to 107 (83 residues), 74.6 bits, see alignment E=1e-24 PF07715: Plug" amino acids 120 to 224 (105 residues), 61.3 bits, see alignment E=2.4e-20 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 200 to 230 (31 residues), 62.8 bits, see alignment (E = 1.9e-21) PF00593: TonB_dep_Rec" amino acids 383 to 941 (559 residues), 53.7 bits, see alignment E=6.8e-18

Best Hits

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9ZAF9 at UniProt or InterPro

Protein Sequence (977 amino acids)

>CA265_RS20320 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MKKLLQSLFMFLLIASTAIAQNRTISGTVTSSEDRQPLPGVSVKIKGSNAGVSTDSKGTF
KITVSSGQNVLVFTFIGYNTVTRQITGSNDINVSMSPDATLLNEVVISNNYITKRKGAET
GSVSLVDGDKVASRPSGNMLHNLQGQVPGVVVAAGSGRPGAAPQIFIRGQGSINSSLAPL
YVVDGQPVDPSDFAQLNPEDMDSFNVLKDASATAIYGSRGANGVILVTTKRGIKSGTDIN
YQAYYGYEQINNQKFKMMNTQQRLDYEVAIGRRAANDPAIPELLKSDFNQVDEVFQKPQT
QSHSLSIRTGNEKTQAFFSGEYAQQNGIYFDSKWERYGARVTVDHKAKSWLKLGISLYAG
NTNERQPNETRNSTANTGMMAYLLLPYENVRDAEGNFKQRLQYGGYSGAYNNLWVRANDY
QHTDYQNLKLLGNTYIEADVTKDIKFRSSYGANYTSYYGGGYNAPLIAAADNGNANRYYS
SWMDGIQRNTLNYNHTFGDHSIAAVIGSEYNFHNDIVFSATAKNTSSPLLLEFGSFQTPS
ATSGSLNKYRMFSALANVNYGYKDKYYVDLSIRRDGSSKFGRNNRWGTFWSAGLGWNIKK
EEFLENVSWLSLAKIRGSIGTTGNDGIGYYPSYDLFGSTTYNGAAGLTPTQAGNPDLSWE
IKRKFNVGLDAAFFKNRLTFTADFYNDVTYDMVLNVPVSYLTGYSSIYQNMGRMYNRGIE
LGLGAQIVKSKDITLNFNTNFTYNKNRVTELYGFRDELLGTGTGVYTAVGYMYGQLKYNR
FSHIDGQTGNEVYLDKNGNQTTNFDGGDAVVLDGKGFYAPYNGAASVDFSYKGFGVFMQW
NYVVGKYTINNTRAWMEWNNASWSNYNRVADLYDRMWKKPGDNDAKYGKYGTGTNFDDRY
IENASYLRLRDLTVYYNFNKSLLSKTKFLNKARVYARANNLVTITKYSGYDPEYFNNLEL
GIYPVSQKFTFGVDVTF