Protein Info for CA265_RS20305 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: RagB/SusD family nutrient uptake outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 498 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF14322: SusD-like_3" amino acids 36 to 246 (211 residues), 93.8 bits, see alignment E=1.7e-30 PF07980: SusD_RagB" amino acids 379 to 471 (93 residues), 55.6 bits, see alignment E=6.8e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z9F3 at UniProt or InterPro

Protein Sequence (498 amino acids)

>CA265_RS20305 RagB/SusD family nutrient uptake outer membrane protein (Pedobacter sp. GW460-11-11-14-LB5)
MKKYLKSYRLQLVKAAIVAIPLFASITSCKKETLQIAPELSLPDVSAYETPARIEALVTG
LYSTAKSGSLFGGRYQIYNDIRAEEFINRTSNGVTGSTVYNSTNNNGDTYVGNFWNQGYL
LINRVNVFLDGLEANKSKLTQAQYDQFSSEAKFLRGLTYFSLVQIFAKPYISNAGASRGL
PLRLLPEISTANNILKSSSVAEIYTQILKDLDAAETGLPNTYSTALLRTTRAHKNTAIAL
KTRVYLTMGNYAKVVEEGDKIVPATAPFSTSARAPHALAASLRAVFTAPYTTSESIFSFP
FAATNAPGTQNQIGYYFSWDGGGNLDYAINTTTGTYSGIYTDPIWPASDARKTSALISTA
TISGTLYTYPTKHSAVSPFVDYVTMIRYAEVLLNVAEAEALRTGGNLVRSRALLDAVRKR
SDATYDFGVLATGAQLADVILKERRIELLMEGFRYNDIARKNLPLKSFGANATIPVADVR
YTFPIPAQEIISNPAAEW