Protein Info for CA265_RS19995 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: AI-2E family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 349 transmembrane" amino acids 12 to 43 (32 residues), see Phobius details amino acids 63 to 85 (23 residues), see Phobius details amino acids 135 to 160 (26 residues), see Phobius details amino acids 193 to 217 (25 residues), see Phobius details amino acids 223 to 249 (27 residues), see Phobius details amino acids 258 to 282 (25 residues), see Phobius details amino acids 292 to 322 (31 residues), see Phobius details PF01594: AI-2E_transport" amino acids 14 to 325 (312 residues), 133.3 bits, see alignment E=5.9e-43

Best Hits

KEGG orthology group: None (inferred from 76% identity to phe:Phep_4237)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z963 at UniProt or InterPro

Protein Sequence (349 amino acids)

>CA265_RS19995 AI-2E family transporter (Pedobacter sp. GW460-11-11-14-LB5)
MSVFSYKQRNNINLVIIIALGVLIAYSLQSIFSAILSTLVLYTIMRPAYIHLAENKGWNK
RVTAIFLITISIILIVMPFYALSSMVISKISELRNNEVFFRNLLVKLQHLIPVKINQDVI
QEGLNRLGNWATQLFPSLISSAVNIVLSLLVMYFLLYFMLIERKKFEFSLIKYAPFREQN
ALRFGDEMRNTTYANVLGQGLICLVQGSLLSLSFYVLGYKDPVFWGVITTFISFVPVLGP
PVVFVPAAILQIANGNNFAGWAMLIFGFVVIINIDNVLRFIIAKKVGNIHPIITVIGVII
GIPLFGILGLVFGPLLLSYFILLVKIYETSTLASERLERIKTNNEHTEL