Protein Info for CA265_RS19850 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 541 PF00171: Aldedh" amino acids 61 to 505 (445 residues), 321.1 bits, see alignment E=5.2e-100

Best Hits

KEGG orthology group: None (inferred from 79% identity to phe:Phep_2271)

Predicted SEED Role

"Glyceraldehyde-3-phosphate dehydrogenase, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z999 at UniProt or InterPro

Protein Sequence (541 amino acids)

>CA265_RS19850 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (Pedobacter sp. GW460-11-11-14-LB5)
MSTSLNLESIFVEESQIPDEFRLTEEINQKEFLSNGEMKPWNGPFNEVFSPVCVKTPEGL
KRKRIGSFPVCTEKESTEALDAAVAAYDNGRGQWPTMSVADRITCVENFTHKMIEQKEIV
AKLIMWEIGKSYADSVKEFDRTVEYIYATIDALKDIDRQSSRFEIEQGIVAQVRRSPLGV
VLCMGPFNYPLNETFTTLIPALIMGNTLLFKPPKHGTLLHYPLLEAFRSSFPKGVVNTIY
GRGNTIVPGLMKSGKINVLTLIGSSKVANELKKLHPKVNRLRAILGLDAKNAAIITKDAD
LDLAVSETVLGSLSFNGQRCTAIKIVYVHRSLAQEFLKRLSAEVEKLKFGMPWEKGVNLT
PLPELNKPEYLKECIDDAVSHGAKVINKNGGQTLETFVYPAIMYPVNSNMKLYREEQFGP
IVPVVPFDDLEEPIEYLIGSPHGQQVSIFSNNAAVISSLIDPLVNQVSRVNINCQCQRGP
DAFPFTGRKDSAEGTLSVVDALRSFSIRSLVATKFTDDNKKLLNEIVKGDDSNFLSTKYI
F