Protein Info for CA265_RS19245 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 196 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 35 to 54 (20 residues), see Phobius details PF14602: Hexapep_2" amino acids 145 to 175 (31 residues), 28.1 bits, see alignment 1.4e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z936 at UniProt or InterPro

Protein Sequence (196 amino acids)

>CA265_RS19245 hypothetical protein (Pedobacter sp. GW460-11-11-14-LB5)
MNVIFKILKNTYFGVISLMALPFSLLFIIFGKLAIYAGAYTEVSIVVSKFPFLFGQKLRY
FYYKATLAHLGTDVVFKYGSFCQYPTARIGNRVLIGLYNAIGEVNMGDDVIIGGFVNFIS
GTSQHAFDDPNQTISAQKAAGRSTITIGSDVWIGSNAVITANIGTRCVIGAGSVVVKAVE
NKSIYAGNPAKLIRSI