Protein Info for CA265_RS19150 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: amidophosphoribosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 232 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00156: Pribosyltran" amino acids 166 to 229 (64 residues), 40.5 bits, see alignment E=9.3e-15

Best Hits

KEGG orthology group: None (inferred from 57% identity to phe:Phep_3856)

Predicted SEED Role

"Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z9F2 at UniProt or InterPro

Protein Sequence (232 amino acids)

>CA265_RS19150 amidophosphoribosyltransferase (Pedobacter sp. GW460-11-11-14-LB5)
MLLVKQWTSDLFGLLFPNLCHACGTHLFRHEQLICLKCLYDLPFTDYHQDADNRVARQLW
GRLPLNAAMAMLYFRKGAKVQNLIHSLKYNGKTDVGVLLGNMLGERLKTEVLYQDINIVI
PVPLHRKKYKIRGYNQSTFIAEGIAAQMGIEISEDHLIRNTSTESQTKKSRYNRYENMKD
VFQVNSPEDISGKHILLVDDVITTGATLEACANTLLAIGAAKVSIAALAFAE