Protein Info for CA265_RS18990 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: cell surface protein SprA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2399 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details TIGR04189: cell surface protein SprA" amino acids 59 to 585 (527 residues), 577.9 bits, see alignment E=2.5e-177 amino acids 624 to 2398 (1775 residues), 2010.7 bits, see alignment E=0 PF14349: SprA_N" amino acids 78 to 343 (266 residues), 67.3 bits, see alignment E=7.1e-23 amino acids 1121 to 1652 (532 residues), 539.1 bits, see alignment E=6.6e-166

Best Hits

KEGG orthology group: None (inferred from 73% identity to phe:Phep_3831)

Predicted SEED Role

"FIG00908880: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z8Z9 at UniProt or InterPro

Protein Sequence (2399 amino acids)

>CA265_RS18990 cell surface protein SprA (Pedobacter sp. GW460-11-11-14-LB5)
MKRISTFLFLIPLFLIASQNAFSQVVPSKTDTITPKNNFGLREKERLGLSPAVNPFSPAP
SNLKRVVEYDAKNKRYVVKELIGEKFVLNTQYLTIDEYQRLVNSEIKRSNWRSISNAEVS
DYRSTGIIPQIQVNSKAFEKLFGGTTIDIQPRGEAELTFLGRVNKNENPLFNERQRVQTN
FDFNQRIQMDLVGNIGTKLKIKSNYNTEAQFDFENQIKLDYTGGPDDIIQKIEAGNVSLP
LNTSLITGTQALFGIKTQLKFGRLNVTSVYTQQKSESREIKITNGAQQNTTTVNIDSYEA
NKHYFLSQYFRNNYNKNLANAPIITSPIQITKIEVWITNKAGNTTDSRDVLGLMDLGENA
PFNTSLLTGGTSGLPAGTTATGFSQQSNNLIAQLNAYQGGAIRQTNSNAVLSFFQTTPAN
SSNTDNFAKLIYARKLNEREFTFQPQLGYLSLNNPLNSDEVLAVAYRYTYNGVEYQVGEF
STDVSFDAANPKVLYAKLLKNETTKIKLPTWDLMMKNIYSIGGYQISSQNFKLDIYRIDN
ETGVDNPVMTEGQNTANKQWIALTEFDRLNQQNERKPDGIFDFVAANNAFGSYSTASNAN
QASMFGVGSNGQTSLVTNTNSGYITIDPANGRIIFPVIEPFGKDLAARFLPSEQALINKY
TFTALYDSTQTIAKQLFQNQNRYIIKVNYQSDISSEFSLNAINVPEGSVKVFAGTMPLTE
GIDFTVDYQGGRVSIINQALLVSGQPIRITTENNELFGLQQRSLFGTRLDYRVNNKLNLG
GTIMNLTEKPLTQKVNIGEEPISNTIWGADINYSSPSRFLTKLVDKLPFLSTKAPSSVTF
YGEFAQLIPGHPRALNFAGSKNGVSYLDDFEASRSVIDLKSAIAWQLSGTPQLFAEHDKS
NDLTYGYNRARIAFYNIDPTFYNSAASTTPANIRNNRAELSNHYVREVIEQEVFPFKETA
TGQALNITTFDVAYYPTVRGPYNFRPTDFRPDGTLLQPKNNWGGFQRKIETNDFEALNVG
FIEFWVMDPFIYKPNSAGGDMYFNLGNISEDILKDGRKSLENGLPATNDPSKYEETAWGR
VPKLQPVVQAFDNNANSRRAQDVGLDGLADADEKVKFAAAITQIKSQLNATASAALDADP
SSDNYAYFRGPALDQINAGILKRYEKYNGTEGNSKTSQQSQEELGLENSASTSLPDGEDI
NRDNNMTQSDEYFQYKVSMRPGDLNVGQNFITDKVTSQVKLANGNTQAVSWYQFRIPIGQ
YQDRVGGIQDFKSIRFFRMFMTNFADTAVMRFAKLQLIRGEWREYNAANEAAQVIVDPSL
PALTPDNSTIEVSTVNIEENGKRSPIPYVTPPGILRERDYSNYRGDTRLNEQSLSVIVKS
LRDGYGRAAFKTAYSDFRSYKHLEMFIHAEAVNNQILNDNDVSAFLRIGTDNQDNYYEYV
IPLKVTNPGTSDPDAIWPEANRMDIDLTLFQNAKLARNVAKQANGQPWPTNVPFTYTDGA
RTIVVKGQPDMSKVRVYMVGIKNPLRAANDEQNDDGLDKNALVWFNELRLTEFDEKGGWA
ATGRLNLKLADFADVNISGSKSTIGFGSIDSKVSERNRADNVLLDVSSAMELGKFLPQKS
GVKIPMFVSYSKQVSTPQYNPRTPDIELKNALAQSTKEQKDSILNFAQDYTVRRGINFTN
VRKERTNNSKPVRLWDIENFAASYAYTQYNHRDFINQSSIQNTYRASLQYSYSKEAKTIA
PFEKIIKSNMLALLKDFNFSIFPSAINFRIDVDRLYSENTLRNNDPNNTIGVYQSGYGTT
FNKNFTMSRIYGIAWNLTRSLQLDFNATNYSIIDEPDGRLDGLKRDTVWQNLKRLGRTTD
YNHNLNVTYNLPIDKIPGLNWITVKTRYGTNFNWQTEPLSTLRDPNINLGNTVQNSRTVQ
INPTLNLTTLYNKFGFIRSAGNDQEGSGAKKFFINLLTSVKNVNASFVQTKGIFLPGYLP
TTKYFGIDNATGAPGLGFAFGSQRDIRDMALNNGWLTTDTLQNQLYVNTLREDFQLTGQV
EPFKDLRITLKANKAQTRNFSTNFRYVASVSSFENLSAITTGDYSVSYIALGTAFKENNS
TVVSGLFNQFMANRMIISRRLGAQNPNSGGVNGGFADGYSKESQDVIISAFMAAYSGKDA
GKTKMNAFPKIPLPNWSLTYSGLTRIPFIADKFSSVDIRHGYRSSYNINGFNSLLRYQET
NGAVSSRDVNNNFLPEYQFAQVTISEYFSPLVGVDTRFKNNLTASFELNRSRLLGLSLSN
SQLAQLSENNMVLGLGYRTNKFRFPFGWFKSLKMDNNMDFKLDVAIRDNKTVIYRADVTE
AEVSSGAKNITLRPSVDYVLNQKFNIKLFYDSNITKPYTSQTFNTSFSNFGFSLRFTLN