Protein Info for CA265_RS18940 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: ribosome recycling factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 187 TIGR00496: ribosome recycling factor" amino acids 14 to 187 (174 residues), 212.9 bits, see alignment E=1.2e-67 PF01765: RRF" amino acids 24 to 185 (162 residues), 213.2 bits, see alignment E=1e-67

Best Hits

Swiss-Prot: 57% identical to RRF_FLAJ1: Ribosome-recycling factor (frr) from Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101)

KEGG orthology group: K02838, ribosome recycling factor (inferred from 86% identity to phe:Phep_0116)

Predicted SEED Role

"Ribosome recycling factor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z8N5 at UniProt or InterPro

Protein Sequence (187 amino acids)

>CA265_RS18940 ribosome recycling factor (Pedobacter sp. GW460-11-11-14-LB5)
MNDLIQLQLMDAQSAMERAIDHCESELTKIRAGKASAGMLDGIFVDYYGAATALSQVASI
NTPDARTIVIQPWEKSLLTAIEKAIQVANIGINPQNDGIVIRLVVPPLTEERRKDLVKKV
KEEAERGRITVRNIRKDANTKIQKLKGEGVSDDEIKTGEGEVQKLTDAYIIKVDKHAEAK
EKDVMTV