Protein Info for CA265_RS18895 in Pedobacter sp. GW460-11-11-14-LB5

Annotation: ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 321 TIGR00125: cytidyltransferase-like domain" amino acids 3 to 37 (35 residues), 41.5 bits, see alignment 6e-15 PF01467: CTP_transf_like" amino acids 6 to 64 (59 residues), 25.2 bits, see alignment E=1.6e-09 PF13521: AAA_28" amino acids 156 to 308 (153 residues), 124.3 bits, see alignment E=5.8e-40

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9Z9P2 at UniProt or InterPro

Protein Sequence (321 amino acids)

>CA265_RS18895 ATPase (Pedobacter sp. GW460-11-11-14-LB5)
MKRGLVIGKFMPIHNGHIALINFAASECDELIVSMSYTPADKIDPAMRFKWIKEIFKDQP
NIKPAIIADDFDDETLALQDRTNIWAIRMKEVYPKIDMLFSSEFYGEPFAFNLDAEHILF
DEPRKFIPVSATLIRTKPFQYWEFIPKEVRPFFVKKICFYGPESTGKSTMAEKMALHYQT
TFVPEVARELITSNDITLDDIIKIGTAQTERVKEKASMANKVVFCDTDLITTKIYSQYYL
NEVPQILNDLENEIRYDLYFLLDIDVKWVADHLRDFGDQRLEMFNLFKGELEKRGINYIQ
ISGNYAEREERIKKIIDSLLA